Cargando…
Empirical mode decomposition of local field potential data from optogenetic experiments
INTRODUCTION: This study investigated the effects of cocaine administration and parvalbumin-type interneuron stimulation on local field potentials (LFPs) recorded in vivo from the medial prefrontal cortex (mPFC) of six mice using optogenetic tools. METHODS: The local network was subject to a brief 1...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354259/ https://www.ncbi.nlm.nih.gov/pubmed/37476356 http://dx.doi.org/10.3389/fncom.2023.1223879 |
_version_ | 1785074889159344128 |
---|---|
author | Oprisan, Sorinel A. Clementsmith, Xandre Tompa, Tamas Lavin, Antonieta |
author_facet | Oprisan, Sorinel A. Clementsmith, Xandre Tompa, Tamas Lavin, Antonieta |
author_sort | Oprisan, Sorinel A. |
collection | PubMed |
description | INTRODUCTION: This study investigated the effects of cocaine administration and parvalbumin-type interneuron stimulation on local field potentials (LFPs) recorded in vivo from the medial prefrontal cortex (mPFC) of six mice using optogenetic tools. METHODS: The local network was subject to a brief 10 ms laser pulse, and the response was recorded for 2 s over 100 trials for each of the six subjects who showed stable coupling between the mPFC and the optrode. Due to the strong non-stationary and nonlinearity of the LFP, we used the adaptive, data-driven, Empirical Mode Decomposition (EMD) method to decompose the signal into orthogonal Intrinsic Mode Functions (IMFs). RESULTS: Through trial and error, we found that seven is the optimum number of orthogonal IMFs that overlaps with known frequency bands of brain activity. We found that the Index of Orthogonality (IO) of IMF amplitudes was close to zero. The Index of Energy Conservation (IEC) for each decomposition was close to unity, as expected for orthogonal decompositions. We found that the power density distribution vs. frequency follows a power law with an average scaling exponent of ~1.4 over the entire range of IMF frequencies 2–2,000 Hz. DISCUSSION: The scaling exponent is slightly smaller for cocaine than the control, suggesting that neural activity avalanches under cocaine have longer life spans and sizes. |
format | Online Article Text |
id | pubmed-10354259 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103542592023-07-20 Empirical mode decomposition of local field potential data from optogenetic experiments Oprisan, Sorinel A. Clementsmith, Xandre Tompa, Tamas Lavin, Antonieta Front Comput Neurosci Neuroscience INTRODUCTION: This study investigated the effects of cocaine administration and parvalbumin-type interneuron stimulation on local field potentials (LFPs) recorded in vivo from the medial prefrontal cortex (mPFC) of six mice using optogenetic tools. METHODS: The local network was subject to a brief 10 ms laser pulse, and the response was recorded for 2 s over 100 trials for each of the six subjects who showed stable coupling between the mPFC and the optrode. Due to the strong non-stationary and nonlinearity of the LFP, we used the adaptive, data-driven, Empirical Mode Decomposition (EMD) method to decompose the signal into orthogonal Intrinsic Mode Functions (IMFs). RESULTS: Through trial and error, we found that seven is the optimum number of orthogonal IMFs that overlaps with known frequency bands of brain activity. We found that the Index of Orthogonality (IO) of IMF amplitudes was close to zero. The Index of Energy Conservation (IEC) for each decomposition was close to unity, as expected for orthogonal decompositions. We found that the power density distribution vs. frequency follows a power law with an average scaling exponent of ~1.4 over the entire range of IMF frequencies 2–2,000 Hz. DISCUSSION: The scaling exponent is slightly smaller for cocaine than the control, suggesting that neural activity avalanches under cocaine have longer life spans and sizes. Frontiers Media S.A. 2023-07-05 /pmc/articles/PMC10354259/ /pubmed/37476356 http://dx.doi.org/10.3389/fncom.2023.1223879 Text en Copyright © 2023 Oprisan, Clementsmith, Tompa and Lavin. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Oprisan, Sorinel A. Clementsmith, Xandre Tompa, Tamas Lavin, Antonieta Empirical mode decomposition of local field potential data from optogenetic experiments |
title | Empirical mode decomposition of local field potential data from optogenetic experiments |
title_full | Empirical mode decomposition of local field potential data from optogenetic experiments |
title_fullStr | Empirical mode decomposition of local field potential data from optogenetic experiments |
title_full_unstemmed | Empirical mode decomposition of local field potential data from optogenetic experiments |
title_short | Empirical mode decomposition of local field potential data from optogenetic experiments |
title_sort | empirical mode decomposition of local field potential data from optogenetic experiments |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354259/ https://www.ncbi.nlm.nih.gov/pubmed/37476356 http://dx.doi.org/10.3389/fncom.2023.1223879 |
work_keys_str_mv | AT oprisansorinela empiricalmodedecompositionoflocalfieldpotentialdatafromoptogeneticexperiments AT clementsmithxandre empiricalmodedecompositionoflocalfieldpotentialdatafromoptogeneticexperiments AT tompatamas empiricalmodedecompositionoflocalfieldpotentialdatafromoptogeneticexperiments AT lavinantonieta empiricalmodedecompositionoflocalfieldpotentialdatafromoptogeneticexperiments |