Cargando…

Neural ordinary differential equations with irregular and noisy data

Measurement noise is an integral part of collecting data of a physical process. Thus, noise removal is necessary to draw conclusions from these data, and it often becomes essential to construct dynamical models using these data. We discuss a methodology to learn differential equation(s) using noisy...

Descripción completa

Detalles Bibliográficos
Autores principales: Goyal, Pawan, Benner, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354476/
https://www.ncbi.nlm.nih.gov/pubmed/37476515
http://dx.doi.org/10.1098/rsos.221475
_version_ 1785074937287933952
author Goyal, Pawan
Benner, Peter
author_facet Goyal, Pawan
Benner, Peter
author_sort Goyal, Pawan
collection PubMed
description Measurement noise is an integral part of collecting data of a physical process. Thus, noise removal is necessary to draw conclusions from these data, and it often becomes essential to construct dynamical models using these data. We discuss a methodology to learn differential equation(s) using noisy and irregularly sampled measurements. In our methodology, the main innovation can be seen in the integration of deep neural networks with the neural ordinary differential equations (ODEs) approach. Precisely, we aim at learning a neural network that provides (approximately) an implicit representation of the data and an additional neural network that models the vector fields of the dependent variables. We combine these two networks by constraints using neural ODEs. The proposed framework to learn a model describing the vector field is highly effective under noisy measurements. The approach can handle scenarios where dependent variables are unavailable at the same temporal grid. Moreover, a particular structure, e.g. second order with respect to time, can easily be incorporated. We demonstrate the effectiveness of the proposed method for learning models using data obtained from various differential equations and present a comparison with the neural ODE method that does not make any special treatment to noise. Additionally, we discuss an ensemble approach to improve the performance of the proposed approach further.
format Online
Article
Text
id pubmed-10354476
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher The Royal Society
record_format MEDLINE/PubMed
spelling pubmed-103544762023-07-20 Neural ordinary differential equations with irregular and noisy data Goyal, Pawan Benner, Peter R Soc Open Sci Computer Science and Artificial Intelligence Measurement noise is an integral part of collecting data of a physical process. Thus, noise removal is necessary to draw conclusions from these data, and it often becomes essential to construct dynamical models using these data. We discuss a methodology to learn differential equation(s) using noisy and irregularly sampled measurements. In our methodology, the main innovation can be seen in the integration of deep neural networks with the neural ordinary differential equations (ODEs) approach. Precisely, we aim at learning a neural network that provides (approximately) an implicit representation of the data and an additional neural network that models the vector fields of the dependent variables. We combine these two networks by constraints using neural ODEs. The proposed framework to learn a model describing the vector field is highly effective under noisy measurements. The approach can handle scenarios where dependent variables are unavailable at the same temporal grid. Moreover, a particular structure, e.g. second order with respect to time, can easily be incorporated. We demonstrate the effectiveness of the proposed method for learning models using data obtained from various differential equations and present a comparison with the neural ODE method that does not make any special treatment to noise. Additionally, we discuss an ensemble approach to improve the performance of the proposed approach further. The Royal Society 2023-07-19 /pmc/articles/PMC10354476/ /pubmed/37476515 http://dx.doi.org/10.1098/rsos.221475 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Computer Science and Artificial Intelligence
Goyal, Pawan
Benner, Peter
Neural ordinary differential equations with irregular and noisy data
title Neural ordinary differential equations with irregular and noisy data
title_full Neural ordinary differential equations with irregular and noisy data
title_fullStr Neural ordinary differential equations with irregular and noisy data
title_full_unstemmed Neural ordinary differential equations with irregular and noisy data
title_short Neural ordinary differential equations with irregular and noisy data
title_sort neural ordinary differential equations with irregular and noisy data
topic Computer Science and Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354476/
https://www.ncbi.nlm.nih.gov/pubmed/37476515
http://dx.doi.org/10.1098/rsos.221475
work_keys_str_mv AT goyalpawan neuralordinarydifferentialequationswithirregularandnoisydata
AT bennerpeter neuralordinarydifferentialequationswithirregularandnoisydata