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Neural ordinary differential equations with irregular and noisy data
Measurement noise is an integral part of collecting data of a physical process. Thus, noise removal is necessary to draw conclusions from these data, and it often becomes essential to construct dynamical models using these data. We discuss a methodology to learn differential equation(s) using noisy...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354476/ https://www.ncbi.nlm.nih.gov/pubmed/37476515 http://dx.doi.org/10.1098/rsos.221475 |
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author | Goyal, Pawan Benner, Peter |
author_facet | Goyal, Pawan Benner, Peter |
author_sort | Goyal, Pawan |
collection | PubMed |
description | Measurement noise is an integral part of collecting data of a physical process. Thus, noise removal is necessary to draw conclusions from these data, and it often becomes essential to construct dynamical models using these data. We discuss a methodology to learn differential equation(s) using noisy and irregularly sampled measurements. In our methodology, the main innovation can be seen in the integration of deep neural networks with the neural ordinary differential equations (ODEs) approach. Precisely, we aim at learning a neural network that provides (approximately) an implicit representation of the data and an additional neural network that models the vector fields of the dependent variables. We combine these two networks by constraints using neural ODEs. The proposed framework to learn a model describing the vector field is highly effective under noisy measurements. The approach can handle scenarios where dependent variables are unavailable at the same temporal grid. Moreover, a particular structure, e.g. second order with respect to time, can easily be incorporated. We demonstrate the effectiveness of the proposed method for learning models using data obtained from various differential equations and present a comparison with the neural ODE method that does not make any special treatment to noise. Additionally, we discuss an ensemble approach to improve the performance of the proposed approach further. |
format | Online Article Text |
id | pubmed-10354476 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-103544762023-07-20 Neural ordinary differential equations with irregular and noisy data Goyal, Pawan Benner, Peter R Soc Open Sci Computer Science and Artificial Intelligence Measurement noise is an integral part of collecting data of a physical process. Thus, noise removal is necessary to draw conclusions from these data, and it often becomes essential to construct dynamical models using these data. We discuss a methodology to learn differential equation(s) using noisy and irregularly sampled measurements. In our methodology, the main innovation can be seen in the integration of deep neural networks with the neural ordinary differential equations (ODEs) approach. Precisely, we aim at learning a neural network that provides (approximately) an implicit representation of the data and an additional neural network that models the vector fields of the dependent variables. We combine these two networks by constraints using neural ODEs. The proposed framework to learn a model describing the vector field is highly effective under noisy measurements. The approach can handle scenarios where dependent variables are unavailable at the same temporal grid. Moreover, a particular structure, e.g. second order with respect to time, can easily be incorporated. We demonstrate the effectiveness of the proposed method for learning models using data obtained from various differential equations and present a comparison with the neural ODE method that does not make any special treatment to noise. Additionally, we discuss an ensemble approach to improve the performance of the proposed approach further. The Royal Society 2023-07-19 /pmc/articles/PMC10354476/ /pubmed/37476515 http://dx.doi.org/10.1098/rsos.221475 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Computer Science and Artificial Intelligence Goyal, Pawan Benner, Peter Neural ordinary differential equations with irregular and noisy data |
title | Neural ordinary differential equations with irregular and noisy data |
title_full | Neural ordinary differential equations with irregular and noisy data |
title_fullStr | Neural ordinary differential equations with irregular and noisy data |
title_full_unstemmed | Neural ordinary differential equations with irregular and noisy data |
title_short | Neural ordinary differential equations with irregular and noisy data |
title_sort | neural ordinary differential equations with irregular and noisy data |
topic | Computer Science and Artificial Intelligence |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354476/ https://www.ncbi.nlm.nih.gov/pubmed/37476515 http://dx.doi.org/10.1098/rsos.221475 |
work_keys_str_mv | AT goyalpawan neuralordinarydifferentialequationswithirregularandnoisydata AT bennerpeter neuralordinarydifferentialequationswithirregularandnoisydata |