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P-TransUNet: an improved parallel network for medical image segmentation

Deep learning-based medical image segmentation has made great progress over the past decades. Scholars have proposed many novel transformer-based segmentation networks to solve the problems of building long-range dependencies and global context connections in convolutional neural networks (CNNs). Ho...

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Autores principales: Chong, Yanwen, Xie, Ningdi, Liu, Xin, Pan, Shaoming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354938/
https://www.ncbi.nlm.nih.gov/pubmed/37464322
http://dx.doi.org/10.1186/s12859-023-05409-7
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author Chong, Yanwen
Xie, Ningdi
Liu, Xin
Pan, Shaoming
author_facet Chong, Yanwen
Xie, Ningdi
Liu, Xin
Pan, Shaoming
author_sort Chong, Yanwen
collection PubMed
description Deep learning-based medical image segmentation has made great progress over the past decades. Scholars have proposed many novel transformer-based segmentation networks to solve the problems of building long-range dependencies and global context connections in convolutional neural networks (CNNs). However, these methods usually replace the CNN-based blocks with improved transformer-based structures, which leads to the lack of local feature extraction ability, and these structures require a huge number of data for training. Moreover, those methods did not pay attention to edge information, which is essential in medical image segmentation. To address these problems, we proposed a new network structure, called P-TransUNet. This network structure combines the designed efficient P-Transformer and the fusion module, which extract distance-related long-range dependencies and local information respectively and produce the fused features. Besides, we introduced edge loss into training to focus the attention of the network on the edge of the lesion area to improve segmentation performance. Extensive experiments across four tasks of medical image segmentation demonstrated the effectiveness of P-TransUNet, and showed that our network outperforms other state-of-the-art methods.
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spelling pubmed-103549382023-07-20 P-TransUNet: an improved parallel network for medical image segmentation Chong, Yanwen Xie, Ningdi Liu, Xin Pan, Shaoming BMC Bioinformatics Research Deep learning-based medical image segmentation has made great progress over the past decades. Scholars have proposed many novel transformer-based segmentation networks to solve the problems of building long-range dependencies and global context connections in convolutional neural networks (CNNs). However, these methods usually replace the CNN-based blocks with improved transformer-based structures, which leads to the lack of local feature extraction ability, and these structures require a huge number of data for training. Moreover, those methods did not pay attention to edge information, which is essential in medical image segmentation. To address these problems, we proposed a new network structure, called P-TransUNet. This network structure combines the designed efficient P-Transformer and the fusion module, which extract distance-related long-range dependencies and local information respectively and produce the fused features. Besides, we introduced edge loss into training to focus the attention of the network on the edge of the lesion area to improve segmentation performance. Extensive experiments across four tasks of medical image segmentation demonstrated the effectiveness of P-TransUNet, and showed that our network outperforms other state-of-the-art methods. BioMed Central 2023-07-18 /pmc/articles/PMC10354938/ /pubmed/37464322 http://dx.doi.org/10.1186/s12859-023-05409-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Chong, Yanwen
Xie, Ningdi
Liu, Xin
Pan, Shaoming
P-TransUNet: an improved parallel network for medical image segmentation
title P-TransUNet: an improved parallel network for medical image segmentation
title_full P-TransUNet: an improved parallel network for medical image segmentation
title_fullStr P-TransUNet: an improved parallel network for medical image segmentation
title_full_unstemmed P-TransUNet: an improved parallel network for medical image segmentation
title_short P-TransUNet: an improved parallel network for medical image segmentation
title_sort p-transunet: an improved parallel network for medical image segmentation
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354938/
https://www.ncbi.nlm.nih.gov/pubmed/37464322
http://dx.doi.org/10.1186/s12859-023-05409-7
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