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Comprehensive analysis of the prognosis and immune infiltration of TMC family members in renal clear cell carcinoma

Renal cancer is a common malignancy of the urinary system, and renal clear cell carcinoma (RCCC) is the most common pathological type. Transmembrane channel-like (TMC) protein is an evolutionarily conserved gene family containing 8 members, however there is still a lack of comprehensive analysis abo...

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Autores principales: Tang, Wenbin, Shi, Zhiyuan, Zhu, Yasheng, Shan, Zhengda, Jiang, Aimin, Wang, Anbang, Chen, Ming, Bao, Yi, Ju, Guanqun, Xu, Weidong, Wang, Junkai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10356759/
https://www.ncbi.nlm.nih.gov/pubmed/37468683
http://dx.doi.org/10.1038/s41598-023-38914-z
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author Tang, Wenbin
Shi, Zhiyuan
Zhu, Yasheng
Shan, Zhengda
Jiang, Aimin
Wang, Anbang
Chen, Ming
Bao, Yi
Ju, Guanqun
Xu, Weidong
Wang, Junkai
author_facet Tang, Wenbin
Shi, Zhiyuan
Zhu, Yasheng
Shan, Zhengda
Jiang, Aimin
Wang, Anbang
Chen, Ming
Bao, Yi
Ju, Guanqun
Xu, Weidong
Wang, Junkai
author_sort Tang, Wenbin
collection PubMed
description Renal cancer is a common malignancy of the urinary system, and renal clear cell carcinoma (RCCC) is the most common pathological type. Transmembrane channel-like (TMC) protein is an evolutionarily conserved gene family containing 8 members, however there is still a lack of comprehensive analysis about TMC family members in RCCC. In this study, we analyzed the expression of TMC family members in RCCC from TCGA and investigated the prognosis values and immune infiltration of TMC family members in RCCC. We found that TMC2, TMC3, TMC5, TMC7 and TMC8 were significantly related with overall survival (OS) of RCCC patients. TMC3, TMC6, and TMC8 was positively correlated with the degree of immune infiltration in RCCC. TMC2, TMC6, TMC7, and TMC8 were positively correlated with immune checkpoint genes, whereas TMC4 was negative. According to KEGG and GO analysis, almost all TMCs except TMC4 were involved in the immune response. Thus, we may regard the TMC family members as novel biomarkers to predict potential prognosis and immunotherapeutic response in RCCC patients.
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spelling pubmed-103567592023-07-21 Comprehensive analysis of the prognosis and immune infiltration of TMC family members in renal clear cell carcinoma Tang, Wenbin Shi, Zhiyuan Zhu, Yasheng Shan, Zhengda Jiang, Aimin Wang, Anbang Chen, Ming Bao, Yi Ju, Guanqun Xu, Weidong Wang, Junkai Sci Rep Article Renal cancer is a common malignancy of the urinary system, and renal clear cell carcinoma (RCCC) is the most common pathological type. Transmembrane channel-like (TMC) protein is an evolutionarily conserved gene family containing 8 members, however there is still a lack of comprehensive analysis about TMC family members in RCCC. In this study, we analyzed the expression of TMC family members in RCCC from TCGA and investigated the prognosis values and immune infiltration of TMC family members in RCCC. We found that TMC2, TMC3, TMC5, TMC7 and TMC8 were significantly related with overall survival (OS) of RCCC patients. TMC3, TMC6, and TMC8 was positively correlated with the degree of immune infiltration in RCCC. TMC2, TMC6, TMC7, and TMC8 were positively correlated with immune checkpoint genes, whereas TMC4 was negative. According to KEGG and GO analysis, almost all TMCs except TMC4 were involved in the immune response. Thus, we may regard the TMC family members as novel biomarkers to predict potential prognosis and immunotherapeutic response in RCCC patients. Nature Publishing Group UK 2023-07-19 /pmc/articles/PMC10356759/ /pubmed/37468683 http://dx.doi.org/10.1038/s41598-023-38914-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Tang, Wenbin
Shi, Zhiyuan
Zhu, Yasheng
Shan, Zhengda
Jiang, Aimin
Wang, Anbang
Chen, Ming
Bao, Yi
Ju, Guanqun
Xu, Weidong
Wang, Junkai
Comprehensive analysis of the prognosis and immune infiltration of TMC family members in renal clear cell carcinoma
title Comprehensive analysis of the prognosis and immune infiltration of TMC family members in renal clear cell carcinoma
title_full Comprehensive analysis of the prognosis and immune infiltration of TMC family members in renal clear cell carcinoma
title_fullStr Comprehensive analysis of the prognosis and immune infiltration of TMC family members in renal clear cell carcinoma
title_full_unstemmed Comprehensive analysis of the prognosis and immune infiltration of TMC family members in renal clear cell carcinoma
title_short Comprehensive analysis of the prognosis and immune infiltration of TMC family members in renal clear cell carcinoma
title_sort comprehensive analysis of the prognosis and immune infiltration of tmc family members in renal clear cell carcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10356759/
https://www.ncbi.nlm.nih.gov/pubmed/37468683
http://dx.doi.org/10.1038/s41598-023-38914-z
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