Cargando…

Prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer

Background: Colon cancer is a common malignant tumor in the digestive tract. Exploring new treatment targets is of great significance for improving the survival rate of colon cancer patients. The present study mainly analyzes the impact of proliferation essential genes (PLEGs) on the prognosis and c...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Jinsheng, Liang, Wei, Xu, Yanqin, Zhong, Shishun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10357000/
https://www.ncbi.nlm.nih.gov/pubmed/37417208
http://dx.doi.org/10.1042/BSR20230733
_version_ 1785075399615578112
author Liu, Jinsheng
Liang, Wei
Xu, Yanqin
Zhong, Shishun
author_facet Liu, Jinsheng
Liang, Wei
Xu, Yanqin
Zhong, Shishun
author_sort Liu, Jinsheng
collection PubMed
description Background: Colon cancer is a common malignant tumor in the digestive tract. Exploring new treatment targets is of great significance for improving the survival rate of colon cancer patients. The present study mainly analyzes the impact of proliferation essential genes (PLEGs) on the prognosis and chemotherapy response of colon cancer patients, as well as identifying the expression and cellular functions of important PLEG. Methods: The DepMap database was utilized for identification of PLEG in colon cancer cells. Through DEGs screening, WGCNA, univariate cox regression survival analysis, and LASSO, a PLEG signature (PLEGs) model was constructed. The impact of PLEGs on the prognosis of colon cancer patients and their response to chemotherapy was further analyzed. Finally, we conducted a random forest analysis and implemented functional experiments to investigate the prominent PLEG that is linked to the development of colon cancer. Results: Based on the expression and prognosis of PLEG, we constructed a PLEGs prognosis model which can effectively predict the prognosis of colon cancer patients and their response to chemotherapy treatment. Random forest analysis showed that UBA1 is a key PLEG in the progression of colon cancer. Immunohistochemistry results revealed that UBA1 protein is significantly upregulated in colon cancer tissues. Cell functional experiments demonstrated that knocking down UBA1 can inhibit the proliferation, invasion, and migration abilities of colon cancer cells. Conclusion: PLEGs have the potential to serve as predictive biomarkers for prognosis and chemotherapy response in colon cancer patients. Among the PLEG, UBA1 plays a prominent role in promoting the malignant progression of colon cancer cells.
format Online
Article
Text
id pubmed-10357000
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Portland Press Ltd.
record_format MEDLINE/PubMed
spelling pubmed-103570002023-07-21 Prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer Liu, Jinsheng Liang, Wei Xu, Yanqin Zhong, Shishun Biosci Rep Cancer Background: Colon cancer is a common malignant tumor in the digestive tract. Exploring new treatment targets is of great significance for improving the survival rate of colon cancer patients. The present study mainly analyzes the impact of proliferation essential genes (PLEGs) on the prognosis and chemotherapy response of colon cancer patients, as well as identifying the expression and cellular functions of important PLEG. Methods: The DepMap database was utilized for identification of PLEG in colon cancer cells. Through DEGs screening, WGCNA, univariate cox regression survival analysis, and LASSO, a PLEG signature (PLEGs) model was constructed. The impact of PLEGs on the prognosis of colon cancer patients and their response to chemotherapy was further analyzed. Finally, we conducted a random forest analysis and implemented functional experiments to investigate the prominent PLEG that is linked to the development of colon cancer. Results: Based on the expression and prognosis of PLEG, we constructed a PLEGs prognosis model which can effectively predict the prognosis of colon cancer patients and their response to chemotherapy treatment. Random forest analysis showed that UBA1 is a key PLEG in the progression of colon cancer. Immunohistochemistry results revealed that UBA1 protein is significantly upregulated in colon cancer tissues. Cell functional experiments demonstrated that knocking down UBA1 can inhibit the proliferation, invasion, and migration abilities of colon cancer cells. Conclusion: PLEGs have the potential to serve as predictive biomarkers for prognosis and chemotherapy response in colon cancer patients. Among the PLEG, UBA1 plays a prominent role in promoting the malignant progression of colon cancer cells. Portland Press Ltd. 2023-07-19 /pmc/articles/PMC10357000/ /pubmed/37417208 http://dx.doi.org/10.1042/BSR20230733 Text en © 2023 The Author(s). https://creativecommons.org/licenses/by/4.0/This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Cancer
Liu, Jinsheng
Liang, Wei
Xu, Yanqin
Zhong, Shishun
Prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer
title Prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer
title_full Prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer
title_fullStr Prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer
title_full_unstemmed Prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer
title_short Prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer
title_sort prognostic value and chemotherapy response prediction of a proliferation essential gene signature in colon cancer
topic Cancer
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10357000/
https://www.ncbi.nlm.nih.gov/pubmed/37417208
http://dx.doi.org/10.1042/BSR20230733
work_keys_str_mv AT liujinsheng prognosticvalueandchemotherapyresponsepredictionofaproliferationessentialgenesignatureincoloncancer
AT liangwei prognosticvalueandchemotherapyresponsepredictionofaproliferationessentialgenesignatureincoloncancer
AT xuyanqin prognosticvalueandchemotherapyresponsepredictionofaproliferationessentialgenesignatureincoloncancer
AT zhongshishun prognosticvalueandchemotherapyresponsepredictionofaproliferationessentialgenesignatureincoloncancer