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Preparation, Crystal Structure, Supramolecular Assembly, and DFT Studies of Two Organic Salts Bearing Pyridine and Pyrimidine
[Image: see text] The effective preparation of two new pyrimidine- and pyridine-based organic crystalline salts with substituted acidic moieties (i.e., (Z)-4-(naphthalen-2-ylamino)-4-oxobut-2-enoic acid (DCNO) and 2-hydroxy-3,5-dinitrobenzoic acid (PCNP)) using methanol as a solvent has been reporte...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10357529/ https://www.ncbi.nlm.nih.gov/pubmed/37483210 http://dx.doi.org/10.1021/acsomega.3c01659 |
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author | Malik, Abida Naseem Tahir, Muhammad Nawaz Ali, Akbar Ashfaq, Muhammad Ibrahim, Muhammad Kuznetsov, Aleksey E. Assiri, Mohammed A. Sameeh, Manal Y. |
author_facet | Malik, Abida Naseem Tahir, Muhammad Nawaz Ali, Akbar Ashfaq, Muhammad Ibrahim, Muhammad Kuznetsov, Aleksey E. Assiri, Mohammed A. Sameeh, Manal Y. |
author_sort | Malik, Abida Naseem |
collection | PubMed |
description | [Image: see text] The effective preparation of two new pyrimidine- and pyridine-based organic crystalline salts with substituted acidic moieties (i.e., (Z)-4-(naphthalen-2-ylamino)-4-oxobut-2-enoic acid (DCNO) and 2-hydroxy-3,5-dinitrobenzoic acid (PCNP)) using methanol as a solvent has been reported. These molecular salts have ionic interactions that are responsible for their structural stabilization in their solid-state assemblies. The crystal structures of DCNO and PCNP were determined by the single-crystal X-ray diffraction (SCXRD) technique. The SCXRD study inferred that cations and anions are strongly packed due to N–H···O, N–H···N, and C–H···O noncovalent interactions in DCNO, whereas in PCNP, N–H···N noncovalent interactions are absent. The noncovalent interactions in both organic crystalline salts were comprehensively investigated by Hirshfeld surface analysis. Further, a detailed density functional theory (DFT) study of both compounds was performed. The optimized structures of both compounds supported the existence of the H-bonding and weak dispersion interactions in the synthesized organic crystalline salt structures. Both compounds were shown to have large and noticeably different HOMO/LUMO energy gaps. The atomic charge analysis results supported the SCXRD and HSA results, showing the formation of intermolecular noncovalent interactions in both organic crystalline salts. The results of the natural bond orbital (NBO) analysis confirmed the existence of (relatively weak) noncovalent interactions between the cation and anion moieties of their organic crystalline salts. The global reactivity parameters (GRPs) analysis showed that both organic crystalline salts’ compounds should be quite thermodynamically stable and that DCNO should be less reactive than PCNP. For both compounds, the molecular electrostatic potential (MEP) analysis results support the existence of intermolecular electrostatic interactions in their organic crystalline salts. |
format | Online Article Text |
id | pubmed-10357529 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-103575292023-07-21 Preparation, Crystal Structure, Supramolecular Assembly, and DFT Studies of Two Organic Salts Bearing Pyridine and Pyrimidine Malik, Abida Naseem Tahir, Muhammad Nawaz Ali, Akbar Ashfaq, Muhammad Ibrahim, Muhammad Kuznetsov, Aleksey E. Assiri, Mohammed A. Sameeh, Manal Y. ACS Omega [Image: see text] The effective preparation of two new pyrimidine- and pyridine-based organic crystalline salts with substituted acidic moieties (i.e., (Z)-4-(naphthalen-2-ylamino)-4-oxobut-2-enoic acid (DCNO) and 2-hydroxy-3,5-dinitrobenzoic acid (PCNP)) using methanol as a solvent has been reported. These molecular salts have ionic interactions that are responsible for their structural stabilization in their solid-state assemblies. The crystal structures of DCNO and PCNP were determined by the single-crystal X-ray diffraction (SCXRD) technique. The SCXRD study inferred that cations and anions are strongly packed due to N–H···O, N–H···N, and C–H···O noncovalent interactions in DCNO, whereas in PCNP, N–H···N noncovalent interactions are absent. The noncovalent interactions in both organic crystalline salts were comprehensively investigated by Hirshfeld surface analysis. Further, a detailed density functional theory (DFT) study of both compounds was performed. The optimized structures of both compounds supported the existence of the H-bonding and weak dispersion interactions in the synthesized organic crystalline salt structures. Both compounds were shown to have large and noticeably different HOMO/LUMO energy gaps. The atomic charge analysis results supported the SCXRD and HSA results, showing the formation of intermolecular noncovalent interactions in both organic crystalline salts. The results of the natural bond orbital (NBO) analysis confirmed the existence of (relatively weak) noncovalent interactions between the cation and anion moieties of their organic crystalline salts. The global reactivity parameters (GRPs) analysis showed that both organic crystalline salts’ compounds should be quite thermodynamically stable and that DCNO should be less reactive than PCNP. For both compounds, the molecular electrostatic potential (MEP) analysis results support the existence of intermolecular electrostatic interactions in their organic crystalline salts. American Chemical Society 2023-07-05 /pmc/articles/PMC10357529/ /pubmed/37483210 http://dx.doi.org/10.1021/acsomega.3c01659 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Malik, Abida Naseem Tahir, Muhammad Nawaz Ali, Akbar Ashfaq, Muhammad Ibrahim, Muhammad Kuznetsov, Aleksey E. Assiri, Mohammed A. Sameeh, Manal Y. Preparation, Crystal Structure, Supramolecular Assembly, and DFT Studies of Two Organic Salts Bearing Pyridine and Pyrimidine |
title | Preparation, Crystal
Structure, Supramolecular Assembly,
and DFT Studies of Two Organic Salts Bearing Pyridine and Pyrimidine |
title_full | Preparation, Crystal
Structure, Supramolecular Assembly,
and DFT Studies of Two Organic Salts Bearing Pyridine and Pyrimidine |
title_fullStr | Preparation, Crystal
Structure, Supramolecular Assembly,
and DFT Studies of Two Organic Salts Bearing Pyridine and Pyrimidine |
title_full_unstemmed | Preparation, Crystal
Structure, Supramolecular Assembly,
and DFT Studies of Two Organic Salts Bearing Pyridine and Pyrimidine |
title_short | Preparation, Crystal
Structure, Supramolecular Assembly,
and DFT Studies of Two Organic Salts Bearing Pyridine and Pyrimidine |
title_sort | preparation, crystal
structure, supramolecular assembly,
and dft studies of two organic salts bearing pyridine and pyrimidine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10357529/ https://www.ncbi.nlm.nih.gov/pubmed/37483210 http://dx.doi.org/10.1021/acsomega.3c01659 |
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