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Comparative analysis of automatic segmentation of esophageal cancer using 3D Res-UNet on conventional and 40-keV virtual mono-energetic CT Images: a retrospective study

OBJECTIVES: To assess the performance of 3D Res-UNet for fully automated segmentation of esophageal cancer (EC) and compare the segmentation accuracy between conventional images (CI) and 40-keV virtual mono-energetic images (VMI(40 kev)). METHODS: Patients underwent spectral CT scanning and diagnose...

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Autores principales: Zhong, Hua, Li, Anqi, Chen, Yingdong, Huang, Qianwen, Chen, Xingbiao, Kang, Jianghe, You, Youkuang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10358343/
https://www.ncbi.nlm.nih.gov/pubmed/37483982
http://dx.doi.org/10.7717/peerj.15707
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author Zhong, Hua
Li, Anqi
Chen, Yingdong
Huang, Qianwen
Chen, Xingbiao
Kang, Jianghe
You, Youkuang
author_facet Zhong, Hua
Li, Anqi
Chen, Yingdong
Huang, Qianwen
Chen, Xingbiao
Kang, Jianghe
You, Youkuang
author_sort Zhong, Hua
collection PubMed
description OBJECTIVES: To assess the performance of 3D Res-UNet for fully automated segmentation of esophageal cancer (EC) and compare the segmentation accuracy between conventional images (CI) and 40-keV virtual mono-energetic images (VMI(40 kev)). METHODS: Patients underwent spectral CT scanning and diagnosed of EC by operation or gastroscope biopsy in our hospital from 2019 to 2020 were analyzed retrospectively. All artery spectral base images were transferred to the dedicated workstation to generate VMI(40 kev) and CI. The segmentation model of EC was constructed by 3D Res-UNet neural network in VMI(40 kev) and CI, respectively. After optimization training, the Dice similarity coefficient (DSC), overlap (IOU), average symmetrical surface distance (ASSD) and 95% Hausdorff distance (HD_95) of EC at pixel level were tested and calculated in the test set. The paired rank sum test was used to compare the results of VMI(40 kev) and CI. RESULTS: A total of 160 patients were included in the analysis and randomly divided into the training dataset (104 patients), validation dataset (26 patients) and test dataset (30 patients). VMI(40 kev)as input data in the training dataset resulted in higher model performance in the test dataset in comparison with using CI as input data (DSC:0.875 vs 0.859, IOU: 0.777 vs 0.755, ASSD:0.911 vs 0.981, HD_95: 4.41 vs 6.23, all p-value <0.05). CONCLUSION: Fully automated segmentation of EC with 3D Res-UNet has high accuracy and clinically feasibility for both CI and VMI(40 kev). Compared with CI, VMI(40 kev) indicated slightly higher accuracy in this test dataset.
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spelling pubmed-103583432023-07-21 Comparative analysis of automatic segmentation of esophageal cancer using 3D Res-UNet on conventional and 40-keV virtual mono-energetic CT Images: a retrospective study Zhong, Hua Li, Anqi Chen, Yingdong Huang, Qianwen Chen, Xingbiao Kang, Jianghe You, Youkuang PeerJ Computational Biology OBJECTIVES: To assess the performance of 3D Res-UNet for fully automated segmentation of esophageal cancer (EC) and compare the segmentation accuracy between conventional images (CI) and 40-keV virtual mono-energetic images (VMI(40 kev)). METHODS: Patients underwent spectral CT scanning and diagnosed of EC by operation or gastroscope biopsy in our hospital from 2019 to 2020 were analyzed retrospectively. All artery spectral base images were transferred to the dedicated workstation to generate VMI(40 kev) and CI. The segmentation model of EC was constructed by 3D Res-UNet neural network in VMI(40 kev) and CI, respectively. After optimization training, the Dice similarity coefficient (DSC), overlap (IOU), average symmetrical surface distance (ASSD) and 95% Hausdorff distance (HD_95) of EC at pixel level were tested and calculated in the test set. The paired rank sum test was used to compare the results of VMI(40 kev) and CI. RESULTS: A total of 160 patients were included in the analysis and randomly divided into the training dataset (104 patients), validation dataset (26 patients) and test dataset (30 patients). VMI(40 kev)as input data in the training dataset resulted in higher model performance in the test dataset in comparison with using CI as input data (DSC:0.875 vs 0.859, IOU: 0.777 vs 0.755, ASSD:0.911 vs 0.981, HD_95: 4.41 vs 6.23, all p-value <0.05). CONCLUSION: Fully automated segmentation of EC with 3D Res-UNet has high accuracy and clinically feasibility for both CI and VMI(40 kev). Compared with CI, VMI(40 kev) indicated slightly higher accuracy in this test dataset. PeerJ Inc. 2023-07-17 /pmc/articles/PMC10358343/ /pubmed/37483982 http://dx.doi.org/10.7717/peerj.15707 Text en ©2023 Zhong et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Computational Biology
Zhong, Hua
Li, Anqi
Chen, Yingdong
Huang, Qianwen
Chen, Xingbiao
Kang, Jianghe
You, Youkuang
Comparative analysis of automatic segmentation of esophageal cancer using 3D Res-UNet on conventional and 40-keV virtual mono-energetic CT Images: a retrospective study
title Comparative analysis of automatic segmentation of esophageal cancer using 3D Res-UNet on conventional and 40-keV virtual mono-energetic CT Images: a retrospective study
title_full Comparative analysis of automatic segmentation of esophageal cancer using 3D Res-UNet on conventional and 40-keV virtual mono-energetic CT Images: a retrospective study
title_fullStr Comparative analysis of automatic segmentation of esophageal cancer using 3D Res-UNet on conventional and 40-keV virtual mono-energetic CT Images: a retrospective study
title_full_unstemmed Comparative analysis of automatic segmentation of esophageal cancer using 3D Res-UNet on conventional and 40-keV virtual mono-energetic CT Images: a retrospective study
title_short Comparative analysis of automatic segmentation of esophageal cancer using 3D Res-UNet on conventional and 40-keV virtual mono-energetic CT Images: a retrospective study
title_sort comparative analysis of automatic segmentation of esophageal cancer using 3d res-unet on conventional and 40-kev virtual mono-energetic ct images: a retrospective study
topic Computational Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10358343/
https://www.ncbi.nlm.nih.gov/pubmed/37483982
http://dx.doi.org/10.7717/peerj.15707
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