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Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer
The role of chemokines in predicting the prognosis of colon cancer has not been mentioned. Chemokines have been shown to be associated with immune cell chemotaxis and activation, so the expression of chemokine genes in tumor tissue may be related to prognosis. We used a least absolute shrinkage and...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10360577/ https://www.ncbi.nlm.nih.gov/pubmed/37484298 http://dx.doi.org/10.1016/j.heliyon.2023.e16478 |
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author | Zhang, Wen Kong, Defeng Li, Guoliang Yang, Zhenrong Cheng, Shujun Li, Hong Feng, Lin Zhang, Kaitai |
author_facet | Zhang, Wen Kong, Defeng Li, Guoliang Yang, Zhenrong Cheng, Shujun Li, Hong Feng, Lin Zhang, Kaitai |
author_sort | Zhang, Wen |
collection | PubMed |
description | The role of chemokines in predicting the prognosis of colon cancer has not been mentioned. Chemokines have been shown to be associated with immune cell chemotaxis and activation, so the expression of chemokine genes in tumor tissue may be related to prognosis. We used a least absolute shrinkage and selection operator (LASSO) model based on chemokine gene families to construct a model that can predict the prognosis of colon cancer patients. We divided patients into high-risk groups and low-risk groups to study the prognosis. Then, we evaluated the relationship between the different risk groups in infiltration of immune cells. It was found that there was less immune cell infiltration in the high-risk group. We conducted a functional enrichment analysis based on model stratification, and explored the biological signal pathways enriched in the high and low-risk groups, which provided ideas for studying the mechanism behind its impact on prognosis. In addition, the chemokine-related gene signature could predict the response of patients to immunotherapy and chemotherapy. |
format | Online Article Text |
id | pubmed-10360577 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-103605772023-07-22 Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer Zhang, Wen Kong, Defeng Li, Guoliang Yang, Zhenrong Cheng, Shujun Li, Hong Feng, Lin Zhang, Kaitai Heliyon Research Article The role of chemokines in predicting the prognosis of colon cancer has not been mentioned. Chemokines have been shown to be associated with immune cell chemotaxis and activation, so the expression of chemokine genes in tumor tissue may be related to prognosis. We used a least absolute shrinkage and selection operator (LASSO) model based on chemokine gene families to construct a model that can predict the prognosis of colon cancer patients. We divided patients into high-risk groups and low-risk groups to study the prognosis. Then, we evaluated the relationship between the different risk groups in infiltration of immune cells. It was found that there was less immune cell infiltration in the high-risk group. We conducted a functional enrichment analysis based on model stratification, and explored the biological signal pathways enriched in the high and low-risk groups, which provided ideas for studying the mechanism behind its impact on prognosis. In addition, the chemokine-related gene signature could predict the response of patients to immunotherapy and chemotherapy. Elsevier 2023-06-05 /pmc/articles/PMC10360577/ /pubmed/37484298 http://dx.doi.org/10.1016/j.heliyon.2023.e16478 Text en © 2023 Published by Elsevier Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Zhang, Wen Kong, Defeng Li, Guoliang Yang, Zhenrong Cheng, Shujun Li, Hong Feng, Lin Zhang, Kaitai Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer |
title | Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer |
title_full | Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer |
title_fullStr | Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer |
title_full_unstemmed | Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer |
title_short | Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer |
title_sort | construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10360577/ https://www.ncbi.nlm.nih.gov/pubmed/37484298 http://dx.doi.org/10.1016/j.heliyon.2023.e16478 |
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