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Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer

The role of chemokines in predicting the prognosis of colon cancer has not been mentioned. Chemokines have been shown to be associated with immune cell chemotaxis and activation, so the expression of chemokine genes in tumor tissue may be related to prognosis. We used a least absolute shrinkage and...

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Autores principales: Zhang, Wen, Kong, Defeng, Li, Guoliang, Yang, Zhenrong, Cheng, Shujun, Li, Hong, Feng, Lin, Zhang, Kaitai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10360577/
https://www.ncbi.nlm.nih.gov/pubmed/37484298
http://dx.doi.org/10.1016/j.heliyon.2023.e16478
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author Zhang, Wen
Kong, Defeng
Li, Guoliang
Yang, Zhenrong
Cheng, Shujun
Li, Hong
Feng, Lin
Zhang, Kaitai
author_facet Zhang, Wen
Kong, Defeng
Li, Guoliang
Yang, Zhenrong
Cheng, Shujun
Li, Hong
Feng, Lin
Zhang, Kaitai
author_sort Zhang, Wen
collection PubMed
description The role of chemokines in predicting the prognosis of colon cancer has not been mentioned. Chemokines have been shown to be associated with immune cell chemotaxis and activation, so the expression of chemokine genes in tumor tissue may be related to prognosis. We used a least absolute shrinkage and selection operator (LASSO) model based on chemokine gene families to construct a model that can predict the prognosis of colon cancer patients. We divided patients into high-risk groups and low-risk groups to study the prognosis. Then, we evaluated the relationship between the different risk groups in infiltration of immune cells. It was found that there was less immune cell infiltration in the high-risk group. We conducted a functional enrichment analysis based on model stratification, and explored the biological signal pathways enriched in the high and low-risk groups, which provided ideas for studying the mechanism behind its impact on prognosis. In addition, the chemokine-related gene signature could predict the response of patients to immunotherapy and chemotherapy.
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spelling pubmed-103605772023-07-22 Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer Zhang, Wen Kong, Defeng Li, Guoliang Yang, Zhenrong Cheng, Shujun Li, Hong Feng, Lin Zhang, Kaitai Heliyon Research Article The role of chemokines in predicting the prognosis of colon cancer has not been mentioned. Chemokines have been shown to be associated with immune cell chemotaxis and activation, so the expression of chemokine genes in tumor tissue may be related to prognosis. We used a least absolute shrinkage and selection operator (LASSO) model based on chemokine gene families to construct a model that can predict the prognosis of colon cancer patients. We divided patients into high-risk groups and low-risk groups to study the prognosis. Then, we evaluated the relationship between the different risk groups in infiltration of immune cells. It was found that there was less immune cell infiltration in the high-risk group. We conducted a functional enrichment analysis based on model stratification, and explored the biological signal pathways enriched in the high and low-risk groups, which provided ideas for studying the mechanism behind its impact on prognosis. In addition, the chemokine-related gene signature could predict the response of patients to immunotherapy and chemotherapy. Elsevier 2023-06-05 /pmc/articles/PMC10360577/ /pubmed/37484298 http://dx.doi.org/10.1016/j.heliyon.2023.e16478 Text en © 2023 Published by Elsevier Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Zhang, Wen
Kong, Defeng
Li, Guoliang
Yang, Zhenrong
Cheng, Shujun
Li, Hong
Feng, Lin
Zhang, Kaitai
Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer
title Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer
title_full Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer
title_fullStr Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer
title_full_unstemmed Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer
title_short Construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer
title_sort construction and validation of a chemokine family-based signature for the prediction of prognosis and therapeutic response in colon cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10360577/
https://www.ncbi.nlm.nih.gov/pubmed/37484298
http://dx.doi.org/10.1016/j.heliyon.2023.e16478
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