Cargando…

Dissecting the HGT network of carbon metabolic genes in soil-borne microbiota

The microbiota inhabiting soil plays a significant role in essential life-supporting element cycles. Here, we investigated the occurrence of horizontal gene transfer (HGT) and established the HGT network of carbon metabolic genes in 764 soil-borne microbiota genomes. Our study sheds light on the cru...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Liangzhi, Liu, Yongjun, Xiao, Qinzhi, Xiao, Zhipeng, Meng, Delong, Yang, Zhaoyue, Deng, Wenqiao, Yin, Huaqun, Liu, Zhenghua
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2023
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10361621/ https://www.ncbi.nlm.nih.gov/pubmed/37485539 http://dx.doi.org/10.3389/fmicb.2023.1173748

Ejemplares similares

Genome-resolved metagenomics provides insights into the ecological roles of the keystone taxa in heavy-metal-contaminated soils
por: Li, Liangzhi, et al.
Publicado: (2023)

Genome mining reveals abiotic stress resistance genes in plant genomes acquired from microbes via HGT
por: Li, Liangzhi, et al.
Publicado: (2022)

AI-driven pan-proteome analyses reveal insights into the biohydrometallurgical properties of Acidithiobacillia
por: Li, Liangzhi, et al.
Publicado: (2023)

Sequence similarity network and protein structure prediction offer insights into the evolution of microbial pathways for ferrous iron oxidation
por: Li, Liangzhi, et al.
Publicado: (2023)

HgtSIM: a simulator for horizontal gene transfer (HGT) in microbial communities
por: Song, Weizhi, et al.
Publicado: (2017)

Harnessing sulfate-reducing bacteria with plants growing to revitalize metal-tainted coal mine soils in Midwest China: metal sequestration performance, ecological networking interaction, and functional enzymatic prediction
por: Yang, Zhendong, et al.
Publicado: (2023)

An Integrated Insight into the Relationship between Soil Microbial Community and Tobacco Bacterial Wilt Disease
por: Yang, Hongwu, et al.
Publicado: (2017)

Soil properties, rhizosphere bacterial community, and plant performance respond differently to fumigation and bioagent treatment in continuous cropping fields
por: Xiong, Jing, et al.
Publicado: (2022)

Biofilms: hot spots of horizontal gene transfer (HGT) in aquatic environments, with a focus on a new HGT mechanism
por: Abe, Kimihiro, et al.
Publicado: (2020)

Deep learning for HGT insertion sites recognition
por: Li, Chen, et al.
Publicado: (2020)

Mechanism of Intermittent Deep Tillage and Different Depths Improving Crop Growth From the Perspective of Rhizosphere Soil Nutrients, Root System Architectures, Bacterial Communities, and Functional Profiles
por: Gu, Yabing, et al.
Publicado: (2022)

The Self-Organization of Marine Microbial Networks under Evolutionary and Ecological Processes: Observations and Modeling
por: Liu, Zhenghua, et al.
Publicado: (2022)

Bootstrap-based Support of HGT Inferred by Maximum Parsimony
por: Park, Hyun Jung, et al.
Publicado: (2010)

Responses of phyllosphere microbiota and plant health to application of two different biocontrol agents
por: Qin, Chong, et al.
Publicado: (2019)

Stochastic and deterministic drivers of seasonal variation of fungal community in tobacco field soil
por: Li, Xing, et al.
Publicado: (2019)

Biogeochemical behavior and pollution control of arsenic in mining areas: A review
por: Zhuang, Fan, et al.
Publicado: (2023)

Transcriptomics of Lactobacillus paracasei: metabolism patterns and cellular responses under high-density culture conditions
por: Li, Liangzhi, et al.
Publicado: (2023)

Bacillus megaterium HgT21: a Promising Metal Multiresistant Plant Growth-Promoting Bacteria for Soil Biorestoration
por: Guzmán-Moreno, Jesús, et al.
Publicado: (2022)

Editorial: Rhizobiaceae mediated HGT: Facts, mechanisms, and evolutionary consequences
por: Matveeva, Tatiana, et al.
Publicado: (2023)

Decomposition of Microbial Necromass Is Divergent at the Individual Taxonomic Level in Soil
por: Dong, Weiling, et al.
Publicado: (2021)

Insights into the Metabolism and Evolution of the Genus Acidiphilium, a Typical Acidophile in Acid Mine Drainage
por: Li, Liangzhi, et al.
Publicado: (2020)

Candida albicans Factor H Binding Molecule Hgt1p – A Low Glucose-Induced Transmembrane Protein Is Trafficked to the Cell Wall and Impairs Phagocytosis and Killing by Human Neutrophils
por: Kenno, Samyr, et al.
Publicado: (2019)

Traits of Exogenous Species and Indigenous Community Contribute to the Species Colonization and Community Succession
por: Tao, Jiemeng, et al.
Publicado: (2018)

Characteristics of soil microbiota and organic carbon distribution in jackfruit plantation under different fertilization regimes
por: Su, Lanxi, et al.
Publicado: (2022)

Use of Potent Topical Corticosteroids (TCS) for Hypergranulation Tissue (HGT) in Pediatric Patients
por: Margulies, Shae, et al.
Publicado: (2022)

A review on the bioleaching of toxic metal(loid)s from contaminated soil: Insight into the mechanism of action and the role of influencing factors
por: Sarkodie, Emmanuel Konadu, et al.
Publicado: (2022)

Changes of intestinal microbiota in the giant salamander (Andrias davidianus) during growth based on high-throughput sequencing
por: Cai, Mingcheng, et al.
Publicado: (2023)

Modeling horizontal gene transfer (HGT) in the gut of the Chagas disease vector Rhodnius prolixus
por: Matthews, Scott, et al.
Publicado: (2011)

HGT turbulence: Confounding phylogenetic influence of duplicative horizontal transfer and differential gene conversion
por: Hao, Weilong, et al.
Publicado: (2011)

HGT-Gen: a tool for generating a phylogenetic tree with horizontal gene transfer
por: Horiike, Tokumasa, et al.
Publicado: (2011)

Reshaping of soil carbon and nitrogen contents in quincentenary ancient rice terraces: The role of both short-term abandonment and prokaryotic functional groups
por: Li, Wenqing, et al.
Publicado: (2022)

Enhancing plant growth in biofertilizer-amended soil through nitrogen-transforming microbial communities
por: Li, Liangzhi, et al.
Publicado: (2023)

Editorial: Microbial regulation of soil carbon cycling in terrestrial ecosystems
por: Semenov, Mikhail, et al.
Publicado: (2023)

Domestication Shapes the Community Structure and Functional Metagenomic Content of the Yak Fecal Microbiota
por: Fu, Haibo, et al.
Publicado: (2021)

Dissecting Community Structure in Wild Blueberry Root and Soil Microbiome
por: Yurgel, Svetlana N., et al.
Publicado: (2018)

Comparative Genomics Provides Insights into the Genetic Diversity and Evolution of the DPANN Superphylum
por: Li, Liangzhi, et al.
Publicado: (2021)

Distinct Patterns of Rhizosphere Microbiota Associated With Rice Genotypes Differing in Aluminum Tolerance in an Acid Sulfate Soil
por: Xiao, Xun, et al.
Publicado: (2022)

Assembly, Core Microbiota, and Function of the Rhizosphere Soil and Bark Microbiota in Eucommia ulmoides
por: Dong, Chunbo, et al.
Publicado: (2022)

Macro and Microelements Drive Diversity and Composition of Prokaryotic and Fungal Communities in Hypersaline Sediments and Saline–Alkaline Soils
por: Liu, Kaihui, et al.
Publicado: (2018)

Milk Fermented by Propionibacterium freudenreichii Induces Apoptosis of HGT-1 Human Gastric Cancer Cells
por: Cousin, Fabien J., et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_aug0gepguo9c1g2jc25i1d6ne5