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Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont
Asian citrus psyllid (Diaphorina citri, D. citri) is the important vector of “Candidatus Liberibacter asiaticus” (CLas), associated with Huanglongbing, the most devastating citrus disease worldwide. CLas can affect endosymbiont abundance of D. citri. Here, we generated the high-quality gut endosymbi...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10361984/ https://www.ncbi.nlm.nih.gov/pubmed/37479750 http://dx.doi.org/10.1038/s41597-023-02345-2 |
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author | Pan, Qi Yu, Shi-Jiang Lei, Shuang Li, Si-Chen Ding, Li-Li Liu, Liu Cheng, Lu-Yan Luo, Ren Lei, Cui-Yun Lou, Bing-Hai Cong, Lin Liu, Hao-Qiang Wang, Xue-Feng Ran, Chun |
author_facet | Pan, Qi Yu, Shi-Jiang Lei, Shuang Li, Si-Chen Ding, Li-Li Liu, Liu Cheng, Lu-Yan Luo, Ren Lei, Cui-Yun Lou, Bing-Hai Cong, Lin Liu, Hao-Qiang Wang, Xue-Feng Ran, Chun |
author_sort | Pan, Qi |
collection | PubMed |
description | Asian citrus psyllid (Diaphorina citri, D. citri) is the important vector of “Candidatus Liberibacter asiaticus” (CLas), associated with Huanglongbing, the most devastating citrus disease worldwide. CLas can affect endosymbiont abundance of D. citri. Here, we generated the high-quality gut endosymbiont metagenomes of Diaphorina citri on the condition of CLas infected and uninfected. The dataset comprised 6616.74 M and 6586.04 M raw reads, on overage, from CLas uninfected and infected psyllid strains, respectively. Taxonomic analysis revealed that a total of 1046 species were annotated with 10 Archaea, 733 Bacteria, 234 Eukaryota, and 69 Viruses. 80 unique genera in CLas infected D. citri were identified. DIAMOND software was used for complement function research against various functional databases, including Nr, KEGG, eggNOG, and CAZy, which annotated 84543 protein-coding genes. These datasets provided an avenue for further study of the interaction mechanism between CLas and D. citri. |
format | Online Article Text |
id | pubmed-10361984 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103619842023-07-23 Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont Pan, Qi Yu, Shi-Jiang Lei, Shuang Li, Si-Chen Ding, Li-Li Liu, Liu Cheng, Lu-Yan Luo, Ren Lei, Cui-Yun Lou, Bing-Hai Cong, Lin Liu, Hao-Qiang Wang, Xue-Feng Ran, Chun Sci Data Data Descriptor Asian citrus psyllid (Diaphorina citri, D. citri) is the important vector of “Candidatus Liberibacter asiaticus” (CLas), associated with Huanglongbing, the most devastating citrus disease worldwide. CLas can affect endosymbiont abundance of D. citri. Here, we generated the high-quality gut endosymbiont metagenomes of Diaphorina citri on the condition of CLas infected and uninfected. The dataset comprised 6616.74 M and 6586.04 M raw reads, on overage, from CLas uninfected and infected psyllid strains, respectively. Taxonomic analysis revealed that a total of 1046 species were annotated with 10 Archaea, 733 Bacteria, 234 Eukaryota, and 69 Viruses. 80 unique genera in CLas infected D. citri were identified. DIAMOND software was used for complement function research against various functional databases, including Nr, KEGG, eggNOG, and CAZy, which annotated 84543 protein-coding genes. These datasets provided an avenue for further study of the interaction mechanism between CLas and D. citri. Nature Publishing Group UK 2023-07-21 /pmc/articles/PMC10361984/ /pubmed/37479750 http://dx.doi.org/10.1038/s41597-023-02345-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Pan, Qi Yu, Shi-Jiang Lei, Shuang Li, Si-Chen Ding, Li-Li Liu, Liu Cheng, Lu-Yan Luo, Ren Lei, Cui-Yun Lou, Bing-Hai Cong, Lin Liu, Hao-Qiang Wang, Xue-Feng Ran, Chun Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont |
title | Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont |
title_full | Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont |
title_fullStr | Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont |
title_full_unstemmed | Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont |
title_short | Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont |
title_sort | effects of candidatus liberibacter asiaticus infection on metagenome of diaphorina citri gut endosymbiont |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10361984/ https://www.ncbi.nlm.nih.gov/pubmed/37479750 http://dx.doi.org/10.1038/s41597-023-02345-2 |
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