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Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont

Asian citrus psyllid (Diaphorina citri, D. citri) is the important vector of “Candidatus Liberibacter asiaticus” (CLas), associated with Huanglongbing, the most devastating citrus disease worldwide. CLas can affect endosymbiont abundance of D. citri. Here, we generated the high-quality gut endosymbi...

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Autores principales: Pan, Qi, Yu, Shi-Jiang, Lei, Shuang, Li, Si-Chen, Ding, Li-Li, Liu, Liu, Cheng, Lu-Yan, Luo, Ren, Lei, Cui-Yun, Lou, Bing-Hai, Cong, Lin, Liu, Hao-Qiang, Wang, Xue-Feng, Ran, Chun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10361984/
https://www.ncbi.nlm.nih.gov/pubmed/37479750
http://dx.doi.org/10.1038/s41597-023-02345-2
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author Pan, Qi
Yu, Shi-Jiang
Lei, Shuang
Li, Si-Chen
Ding, Li-Li
Liu, Liu
Cheng, Lu-Yan
Luo, Ren
Lei, Cui-Yun
Lou, Bing-Hai
Cong, Lin
Liu, Hao-Qiang
Wang, Xue-Feng
Ran, Chun
author_facet Pan, Qi
Yu, Shi-Jiang
Lei, Shuang
Li, Si-Chen
Ding, Li-Li
Liu, Liu
Cheng, Lu-Yan
Luo, Ren
Lei, Cui-Yun
Lou, Bing-Hai
Cong, Lin
Liu, Hao-Qiang
Wang, Xue-Feng
Ran, Chun
author_sort Pan, Qi
collection PubMed
description Asian citrus psyllid (Diaphorina citri, D. citri) is the important vector of “Candidatus Liberibacter asiaticus” (CLas), associated with Huanglongbing, the most devastating citrus disease worldwide. CLas can affect endosymbiont abundance of D. citri. Here, we generated the high-quality gut endosymbiont metagenomes of Diaphorina citri on the condition of CLas infected and uninfected. The dataset comprised 6616.74 M and 6586.04 M raw reads, on overage, from CLas uninfected and infected psyllid strains, respectively. Taxonomic analysis revealed that a total of 1046 species were annotated with 10 Archaea, 733 Bacteria, 234 Eukaryota, and 69 Viruses. 80 unique genera in CLas infected D. citri were identified. DIAMOND software was used for complement function research against various functional databases, including Nr, KEGG, eggNOG, and CAZy, which annotated 84543 protein-coding genes. These datasets provided an avenue for further study of the interaction mechanism between CLas and D. citri.
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spelling pubmed-103619842023-07-23 Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont Pan, Qi Yu, Shi-Jiang Lei, Shuang Li, Si-Chen Ding, Li-Li Liu, Liu Cheng, Lu-Yan Luo, Ren Lei, Cui-Yun Lou, Bing-Hai Cong, Lin Liu, Hao-Qiang Wang, Xue-Feng Ran, Chun Sci Data Data Descriptor Asian citrus psyllid (Diaphorina citri, D. citri) is the important vector of “Candidatus Liberibacter asiaticus” (CLas), associated with Huanglongbing, the most devastating citrus disease worldwide. CLas can affect endosymbiont abundance of D. citri. Here, we generated the high-quality gut endosymbiont metagenomes of Diaphorina citri on the condition of CLas infected and uninfected. The dataset comprised 6616.74 M and 6586.04 M raw reads, on overage, from CLas uninfected and infected psyllid strains, respectively. Taxonomic analysis revealed that a total of 1046 species were annotated with 10 Archaea, 733 Bacteria, 234 Eukaryota, and 69 Viruses. 80 unique genera in CLas infected D. citri were identified. DIAMOND software was used for complement function research against various functional databases, including Nr, KEGG, eggNOG, and CAZy, which annotated 84543 protein-coding genes. These datasets provided an avenue for further study of the interaction mechanism between CLas and D. citri. Nature Publishing Group UK 2023-07-21 /pmc/articles/PMC10361984/ /pubmed/37479750 http://dx.doi.org/10.1038/s41597-023-02345-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Pan, Qi
Yu, Shi-Jiang
Lei, Shuang
Li, Si-Chen
Ding, Li-Li
Liu, Liu
Cheng, Lu-Yan
Luo, Ren
Lei, Cui-Yun
Lou, Bing-Hai
Cong, Lin
Liu, Hao-Qiang
Wang, Xue-Feng
Ran, Chun
Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont
title Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont
title_full Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont
title_fullStr Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont
title_full_unstemmed Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont
title_short Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont
title_sort effects of candidatus liberibacter asiaticus infection on metagenome of diaphorina citri gut endosymbiont
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10361984/
https://www.ncbi.nlm.nih.gov/pubmed/37479750
http://dx.doi.org/10.1038/s41597-023-02345-2
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