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Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms

Four yeast strains were isolated from the gut of stingless bee, collected in Churdhar, Himachal Pradesh, India. Physiological characterization, morphological examination, and sequence analysis of small subunit ribosomal RNA (18S rRNA) genes, internal transcribed spacer (ITS) region, and D1/D2 domain...

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Autores principales: Kumari, Alka, Mihooliya, Kanti N., Sahoo, Debendra K., Bhattacharyya, Mani S., Prasad, Gandham S., Pinnaka, Anil Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362016/
https://www.ncbi.nlm.nih.gov/pubmed/37479715
http://dx.doi.org/10.1038/s41598-023-38241-3
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author Kumari, Alka
Mihooliya, Kanti N.
Sahoo, Debendra K.
Bhattacharyya, Mani S.
Prasad, Gandham S.
Pinnaka, Anil Kumar
author_facet Kumari, Alka
Mihooliya, Kanti N.
Sahoo, Debendra K.
Bhattacharyya, Mani S.
Prasad, Gandham S.
Pinnaka, Anil Kumar
author_sort Kumari, Alka
collection PubMed
description Four yeast strains were isolated from the gut of stingless bee, collected in Churdhar, Himachal Pradesh, India. Physiological characterization, morphological examination, and sequence analysis of small subunit ribosomal RNA (18S rRNA) genes, internal transcribed spacer (ITS) region, and D1/D2 domain of the large subunit rRNA gene revealed that the four strains isolated from the gut of stingless bee belonged to the Debaryomyces clade. Strain CIG-23H(T) showed sequence divergence of 7.5% from Debaryomyces nepalensis JCM 2095(T), 7.8% from Debaryomyces udenii JCM 7855(T), and Debaryomyces coudertii JCM 2387(T) in the D1/D2 domain. In the ITS region sequences, strain CIG-23H(T) showed a 15% sequence divergence from Debaryomyces nepalensis JCM 2095(T) and Debaryomyces coudertii JCM 2387(T). In 18S rRNA gene sequence, the strain CIG-23H(T) showed 1.14% sequence divergence from Debaryomyces nepalensis JCM 2095 and and Debaryomyces coudertii JCM 2387, and 0.83% sequence divergence from Debaryomyces hansenii NRRL Y-7426. Strain CIG-23H(T) can utilize more carbon sources than closely related species. The findings suggest that strain CIG-23H(T) is a novel species of the genus Debaryomyces, and we propose to name it as Debaryomyces apis f.a., sp. nov. The holotype is CBS 16297(T), and the isotypes are MTCC 12914(T) and KCTC 37024(T). The MycoBank number of Debaryomyces apis f.a., sp. nov. is MB836065. Additionally, a method using cresol red and Bromothymol blue pH indicator dyes was developed to screen for lipase producers, which is more sensitive and efficient than the currently used phenol red and rhodamine B dye-based screening methods, and avoids the problem of less differentiable zone of hydrolysis.
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spelling pubmed-103620162023-07-23 Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms Kumari, Alka Mihooliya, Kanti N. Sahoo, Debendra K. Bhattacharyya, Mani S. Prasad, Gandham S. Pinnaka, Anil Kumar Sci Rep Article Four yeast strains were isolated from the gut of stingless bee, collected in Churdhar, Himachal Pradesh, India. Physiological characterization, morphological examination, and sequence analysis of small subunit ribosomal RNA (18S rRNA) genes, internal transcribed spacer (ITS) region, and D1/D2 domain of the large subunit rRNA gene revealed that the four strains isolated from the gut of stingless bee belonged to the Debaryomyces clade. Strain CIG-23H(T) showed sequence divergence of 7.5% from Debaryomyces nepalensis JCM 2095(T), 7.8% from Debaryomyces udenii JCM 7855(T), and Debaryomyces coudertii JCM 2387(T) in the D1/D2 domain. In the ITS region sequences, strain CIG-23H(T) showed a 15% sequence divergence from Debaryomyces nepalensis JCM 2095(T) and Debaryomyces coudertii JCM 2387(T). In 18S rRNA gene sequence, the strain CIG-23H(T) showed 1.14% sequence divergence from Debaryomyces nepalensis JCM 2095 and and Debaryomyces coudertii JCM 2387, and 0.83% sequence divergence from Debaryomyces hansenii NRRL Y-7426. Strain CIG-23H(T) can utilize more carbon sources than closely related species. The findings suggest that strain CIG-23H(T) is a novel species of the genus Debaryomyces, and we propose to name it as Debaryomyces apis f.a., sp. nov. The holotype is CBS 16297(T), and the isotypes are MTCC 12914(T) and KCTC 37024(T). The MycoBank number of Debaryomyces apis f.a., sp. nov. is MB836065. Additionally, a method using cresol red and Bromothymol blue pH indicator dyes was developed to screen for lipase producers, which is more sensitive and efficient than the currently used phenol red and rhodamine B dye-based screening methods, and avoids the problem of less differentiable zone of hydrolysis. Nature Publishing Group UK 2023-07-21 /pmc/articles/PMC10362016/ /pubmed/37479715 http://dx.doi.org/10.1038/s41598-023-38241-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kumari, Alka
Mihooliya, Kanti N.
Sahoo, Debendra K.
Bhattacharyya, Mani S.
Prasad, Gandham S.
Pinnaka, Anil Kumar
Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms
title Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms
title_full Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms
title_fullStr Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms
title_full_unstemmed Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms
title_short Description of lipase producing novel yeast species Debaryomyces apis f.a., sp. nov. and a modified pH indicator dye-based method for the screening of lipase producing microorganisms
title_sort description of lipase producing novel yeast species debaryomyces apis f.a., sp. nov. and a modified ph indicator dye-based method for the screening of lipase producing microorganisms
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362016/
https://www.ncbi.nlm.nih.gov/pubmed/37479715
http://dx.doi.org/10.1038/s41598-023-38241-3
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