Cargando…
Upcycling rice yield trial data using a weather-driven crop growth model
Efficient plant breeding plays a significant role in increasing crop yields and attaining food security under climate change. Screening new cultivars through yield trials in multi-environments has improved crop yields, but the accumulated data from these trials has not been effectively upcycled. We...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362053/ https://www.ncbi.nlm.nih.gov/pubmed/37479731 http://dx.doi.org/10.1038/s42003-023-05145-x |
_version_ | 1785076337514381312 |
---|---|
author | Shimono, Hiroyuki Abe, Akira Kim, Chyon Hae Sato, Chikashi Iwata, Hiroyoshi |
author_facet | Shimono, Hiroyuki Abe, Akira Kim, Chyon Hae Sato, Chikashi Iwata, Hiroyoshi |
author_sort | Shimono, Hiroyuki |
collection | PubMed |
description | Efficient plant breeding plays a significant role in increasing crop yields and attaining food security under climate change. Screening new cultivars through yield trials in multi-environments has improved crop yields, but the accumulated data from these trials has not been effectively upcycled. We propose a simple method that quantifies cultivar-specific productivity characteristics using two regression coefficients: yield-ability (β) and yield-plasticity (α). The recorded yields of each cultivar are expressed as a unique linear regression in response to the theoretical potential yield (Y(p)) calculated by a weather-driven crop growth model, called as the “YpCGM method”. We apply this to 72510 independent datasets from yield trials of rice that used 237 cultivars measured at 110 locations in Japan over 38 years. The YpCGM method can upcycle accumulated yield data for use in genetic-gain analysis and genome-wide-association studies to guide future breeding programs for developing new cultivars suitable for the world’s changing climate. |
format | Online Article Text |
id | pubmed-10362053 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103620532023-07-23 Upcycling rice yield trial data using a weather-driven crop growth model Shimono, Hiroyuki Abe, Akira Kim, Chyon Hae Sato, Chikashi Iwata, Hiroyoshi Commun Biol Article Efficient plant breeding plays a significant role in increasing crop yields and attaining food security under climate change. Screening new cultivars through yield trials in multi-environments has improved crop yields, but the accumulated data from these trials has not been effectively upcycled. We propose a simple method that quantifies cultivar-specific productivity characteristics using two regression coefficients: yield-ability (β) and yield-plasticity (α). The recorded yields of each cultivar are expressed as a unique linear regression in response to the theoretical potential yield (Y(p)) calculated by a weather-driven crop growth model, called as the “YpCGM method”. We apply this to 72510 independent datasets from yield trials of rice that used 237 cultivars measured at 110 locations in Japan over 38 years. The YpCGM method can upcycle accumulated yield data for use in genetic-gain analysis and genome-wide-association studies to guide future breeding programs for developing new cultivars suitable for the world’s changing climate. Nature Publishing Group UK 2023-07-21 /pmc/articles/PMC10362053/ /pubmed/37479731 http://dx.doi.org/10.1038/s42003-023-05145-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Shimono, Hiroyuki Abe, Akira Kim, Chyon Hae Sato, Chikashi Iwata, Hiroyoshi Upcycling rice yield trial data using a weather-driven crop growth model |
title | Upcycling rice yield trial data using a weather-driven crop growth model |
title_full | Upcycling rice yield trial data using a weather-driven crop growth model |
title_fullStr | Upcycling rice yield trial data using a weather-driven crop growth model |
title_full_unstemmed | Upcycling rice yield trial data using a weather-driven crop growth model |
title_short | Upcycling rice yield trial data using a weather-driven crop growth model |
title_sort | upcycling rice yield trial data using a weather-driven crop growth model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362053/ https://www.ncbi.nlm.nih.gov/pubmed/37479731 http://dx.doi.org/10.1038/s42003-023-05145-x |
work_keys_str_mv | AT shimonohiroyuki upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel AT abeakira upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel AT kimchyonhae upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel AT satochikashi upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel AT iwatahiroyoshi upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel |