Cargando…

Upcycling rice yield trial data using a weather-driven crop growth model

Efficient plant breeding plays a significant role in increasing crop yields and attaining food security under climate change. Screening new cultivars through yield trials in multi-environments has improved crop yields, but the accumulated data from these trials has not been effectively upcycled. We...

Descripción completa

Detalles Bibliográficos
Autores principales: Shimono, Hiroyuki, Abe, Akira, Kim, Chyon Hae, Sato, Chikashi, Iwata, Hiroyoshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362053/
https://www.ncbi.nlm.nih.gov/pubmed/37479731
http://dx.doi.org/10.1038/s42003-023-05145-x
_version_ 1785076337514381312
author Shimono, Hiroyuki
Abe, Akira
Kim, Chyon Hae
Sato, Chikashi
Iwata, Hiroyoshi
author_facet Shimono, Hiroyuki
Abe, Akira
Kim, Chyon Hae
Sato, Chikashi
Iwata, Hiroyoshi
author_sort Shimono, Hiroyuki
collection PubMed
description Efficient plant breeding plays a significant role in increasing crop yields and attaining food security under climate change. Screening new cultivars through yield trials in multi-environments has improved crop yields, but the accumulated data from these trials has not been effectively upcycled. We propose a simple method that quantifies cultivar-specific productivity characteristics using two regression coefficients: yield-ability (β) and yield-plasticity (α). The recorded yields of each cultivar are expressed as a unique linear regression in response to the theoretical potential yield (Y(p)) calculated by a weather-driven crop growth model, called as the “YpCGM method”. We apply this to 72510 independent datasets from yield trials of rice that used 237 cultivars measured at 110 locations in Japan over 38 years. The YpCGM method can upcycle accumulated yield data for use in genetic-gain analysis and genome-wide-association studies to guide future breeding programs for developing new cultivars suitable for the world’s changing climate.
format Online
Article
Text
id pubmed-10362053
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-103620532023-07-23 Upcycling rice yield trial data using a weather-driven crop growth model Shimono, Hiroyuki Abe, Akira Kim, Chyon Hae Sato, Chikashi Iwata, Hiroyoshi Commun Biol Article Efficient plant breeding plays a significant role in increasing crop yields and attaining food security under climate change. Screening new cultivars through yield trials in multi-environments has improved crop yields, but the accumulated data from these trials has not been effectively upcycled. We propose a simple method that quantifies cultivar-specific productivity characteristics using two regression coefficients: yield-ability (β) and yield-plasticity (α). The recorded yields of each cultivar are expressed as a unique linear regression in response to the theoretical potential yield (Y(p)) calculated by a weather-driven crop growth model, called as the “YpCGM method”. We apply this to 72510 independent datasets from yield trials of rice that used 237 cultivars measured at 110 locations in Japan over 38 years. The YpCGM method can upcycle accumulated yield data for use in genetic-gain analysis and genome-wide-association studies to guide future breeding programs for developing new cultivars suitable for the world’s changing climate. Nature Publishing Group UK 2023-07-21 /pmc/articles/PMC10362053/ /pubmed/37479731 http://dx.doi.org/10.1038/s42003-023-05145-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shimono, Hiroyuki
Abe, Akira
Kim, Chyon Hae
Sato, Chikashi
Iwata, Hiroyoshi
Upcycling rice yield trial data using a weather-driven crop growth model
title Upcycling rice yield trial data using a weather-driven crop growth model
title_full Upcycling rice yield trial data using a weather-driven crop growth model
title_fullStr Upcycling rice yield trial data using a weather-driven crop growth model
title_full_unstemmed Upcycling rice yield trial data using a weather-driven crop growth model
title_short Upcycling rice yield trial data using a weather-driven crop growth model
title_sort upcycling rice yield trial data using a weather-driven crop growth model
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362053/
https://www.ncbi.nlm.nih.gov/pubmed/37479731
http://dx.doi.org/10.1038/s42003-023-05145-x
work_keys_str_mv AT shimonohiroyuki upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel
AT abeakira upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel
AT kimchyonhae upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel
AT satochikashi upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel
AT iwatahiroyoshi upcyclingriceyieldtrialdatausingaweatherdrivencropgrowthmodel