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Comprehensive Analysis of Differential Gene Expression and Correlated Immune Infiltration in Bladder Cancer

BACKGROUND: Bladder cancer (BCa) is one of the most common urinary tract malignancies. Our study aimed to provide promising biomarkers for BCa screening and prognosis. METHODS: BCa samples were obtained from Gene Expression Omnibus (GEO) datasets. Differentially expressed genes (DEGs) were analysed...

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Autores principales: Xiao, Xiao, Peng, Junxiong, Chen, Yong, Lu, Xingshan, Sun, Wei, Xiao, Weizhong, Yuan, Mengjuan, Huang, Xiaolan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Tehran University of Medical Sciences 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362833/
https://www.ncbi.nlm.nih.gov/pubmed/37484159
http://dx.doi.org/10.18502/ijph.v52i6.12988
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author Xiao, Xiao
Peng, Junxiong
Chen, Yong
Lu, Xingshan
Sun, Wei
Xiao, Weizhong
Yuan, Mengjuan
Huang, Xiaolan
author_facet Xiao, Xiao
Peng, Junxiong
Chen, Yong
Lu, Xingshan
Sun, Wei
Xiao, Weizhong
Yuan, Mengjuan
Huang, Xiaolan
author_sort Xiao, Xiao
collection PubMed
description BACKGROUND: Bladder cancer (BCa) is one of the most common urinary tract malignancies. Our study aimed to provide promising biomarkers for BCa screening and prognosis. METHODS: BCa samples were obtained from Gene Expression Omnibus (GEO) datasets. Differentially expressed genes (DEGs) were analysed by GO/KEGG analysis. Univariate Cox hazard analysis and Kaplan Meier Curve clarified the relevance of DEGs and survival. Receiver operating characteristic (ROC) curve showed the discrimination ability of DEGs in BCa patient outcome prediction. RT-PCR was used to validate gene expression. RESULTS: Overall, 61 common up regulated and 170 common down-regulated genes in BCa were obtained. DEGs were mainly enriched in proliferation and metastasis processes. CDC20, COL14A1, SPARCL1, TMOD1, RHOJ, FXYD6 and MFAP4 had clinical relevance to survival with high accuracy. CDC20, SPARCL1 and TMOD1 are promising biomarkers of BCa. CDC20, SPARCL1 and TMOD1 are involved in cancer immune infiltration. CONCLUSION: CDC20, SPARCL1 and TMOD1 are promising biomarkers of bladder cancer. In addition, CDC20, SPARCL1 and TMOD1 are involved in cancer immune infiltration, which provides new targets in immune therapy in bladder cancer.
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spelling pubmed-103628332023-07-23 Comprehensive Analysis of Differential Gene Expression and Correlated Immune Infiltration in Bladder Cancer Xiao, Xiao Peng, Junxiong Chen, Yong Lu, Xingshan Sun, Wei Xiao, Weizhong Yuan, Mengjuan Huang, Xiaolan Iran J Public Health Original Article BACKGROUND: Bladder cancer (BCa) is one of the most common urinary tract malignancies. Our study aimed to provide promising biomarkers for BCa screening and prognosis. METHODS: BCa samples were obtained from Gene Expression Omnibus (GEO) datasets. Differentially expressed genes (DEGs) were analysed by GO/KEGG analysis. Univariate Cox hazard analysis and Kaplan Meier Curve clarified the relevance of DEGs and survival. Receiver operating characteristic (ROC) curve showed the discrimination ability of DEGs in BCa patient outcome prediction. RT-PCR was used to validate gene expression. RESULTS: Overall, 61 common up regulated and 170 common down-regulated genes in BCa were obtained. DEGs were mainly enriched in proliferation and metastasis processes. CDC20, COL14A1, SPARCL1, TMOD1, RHOJ, FXYD6 and MFAP4 had clinical relevance to survival with high accuracy. CDC20, SPARCL1 and TMOD1 are promising biomarkers of BCa. CDC20, SPARCL1 and TMOD1 are involved in cancer immune infiltration. CONCLUSION: CDC20, SPARCL1 and TMOD1 are promising biomarkers of bladder cancer. In addition, CDC20, SPARCL1 and TMOD1 are involved in cancer immune infiltration, which provides new targets in immune therapy in bladder cancer. Tehran University of Medical Sciences 2023-06 /pmc/articles/PMC10362833/ /pubmed/37484159 http://dx.doi.org/10.18502/ijph.v52i6.12988 Text en Copyright © 2023 Xiao et al. Published by Tehran University of Medical Sciences https://creativecommons.org/licenses/by-nc/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International license (https://creativecommons.org/licenses/by-nc/4.0/). Non-commercial uses of the work are permitted, provided the original work is properly cited.
spellingShingle Original Article
Xiao, Xiao
Peng, Junxiong
Chen, Yong
Lu, Xingshan
Sun, Wei
Xiao, Weizhong
Yuan, Mengjuan
Huang, Xiaolan
Comprehensive Analysis of Differential Gene Expression and Correlated Immune Infiltration in Bladder Cancer
title Comprehensive Analysis of Differential Gene Expression and Correlated Immune Infiltration in Bladder Cancer
title_full Comprehensive Analysis of Differential Gene Expression and Correlated Immune Infiltration in Bladder Cancer
title_fullStr Comprehensive Analysis of Differential Gene Expression and Correlated Immune Infiltration in Bladder Cancer
title_full_unstemmed Comprehensive Analysis of Differential Gene Expression and Correlated Immune Infiltration in Bladder Cancer
title_short Comprehensive Analysis of Differential Gene Expression and Correlated Immune Infiltration in Bladder Cancer
title_sort comprehensive analysis of differential gene expression and correlated immune infiltration in bladder cancer
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362833/
https://www.ncbi.nlm.nih.gov/pubmed/37484159
http://dx.doi.org/10.18502/ijph.v52i6.12988
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