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Recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue
This paper uses recurrence quantification analysis (RQA) combined with entropy measures and organization indices to characterize arrhythmic patterns and dynamics in computer simulations of cardiac tissue. We performed different simulations of cardiac tissues of sizes comparable to the human heart at...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10363137/ https://www.ncbi.nlm.nih.gov/pubmed/37481668 http://dx.doi.org/10.1038/s41598-023-38256-w |
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author | Halfar, Radek Lawson, Brodie A. J. dos Santos, Rodrigo Weber Burrage, Kevin |
author_facet | Halfar, Radek Lawson, Brodie A. J. dos Santos, Rodrigo Weber Burrage, Kevin |
author_sort | Halfar, Radek |
collection | PubMed |
description | This paper uses recurrence quantification analysis (RQA) combined with entropy measures and organization indices to characterize arrhythmic patterns and dynamics in computer simulations of cardiac tissue. We performed different simulations of cardiac tissues of sizes comparable to the human heart atrium. In these simulations, we observed four classic arrhythmic patterns: a spiral wave anchored to a highly fibrotic region resulting in sustained re-entry, a meandering spiral wave, fibrillation, and a spiral wave anchored to a scar region that breaks up into wavelets away from the main rotor. A detailed analysis revealed that, within the same simulation, maps of RQA metrics could differentiate regions with regular AP propagation from ones with chaotic activity. In particular, the combination of two RQA metrics, the length of the longest diagonal string of recurrence points and the mean length of diagonal lines, was able to identify the location of rotor tips, which are the active elements that maintain spiral waves and fibrillation. By proposing low-dimensional models based on the mean value and spatial correlation of metrics calculated from membrane potential time series, we identify RQA-based metrics that successfully separate the four different types of cardiac arrhythmia into distinct regions of the feature space, and thus might be used for automatic classification, in particular distinguishing between fibrillation driven by self-sustaining chaos and that created by a persistent rotor and wavebreak. We also discuss the practical applicability of such an approach. |
format | Online Article Text |
id | pubmed-10363137 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103631372023-07-24 Recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue Halfar, Radek Lawson, Brodie A. J. dos Santos, Rodrigo Weber Burrage, Kevin Sci Rep Article This paper uses recurrence quantification analysis (RQA) combined with entropy measures and organization indices to characterize arrhythmic patterns and dynamics in computer simulations of cardiac tissue. We performed different simulations of cardiac tissues of sizes comparable to the human heart atrium. In these simulations, we observed four classic arrhythmic patterns: a spiral wave anchored to a highly fibrotic region resulting in sustained re-entry, a meandering spiral wave, fibrillation, and a spiral wave anchored to a scar region that breaks up into wavelets away from the main rotor. A detailed analysis revealed that, within the same simulation, maps of RQA metrics could differentiate regions with regular AP propagation from ones with chaotic activity. In particular, the combination of two RQA metrics, the length of the longest diagonal string of recurrence points and the mean length of diagonal lines, was able to identify the location of rotor tips, which are the active elements that maintain spiral waves and fibrillation. By proposing low-dimensional models based on the mean value and spatial correlation of metrics calculated from membrane potential time series, we identify RQA-based metrics that successfully separate the four different types of cardiac arrhythmia into distinct regions of the feature space, and thus might be used for automatic classification, in particular distinguishing between fibrillation driven by self-sustaining chaos and that created by a persistent rotor and wavebreak. We also discuss the practical applicability of such an approach. Nature Publishing Group UK 2023-07-22 /pmc/articles/PMC10363137/ /pubmed/37481668 http://dx.doi.org/10.1038/s41598-023-38256-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Halfar, Radek Lawson, Brodie A. J. dos Santos, Rodrigo Weber Burrage, Kevin Recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue |
title | Recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue |
title_full | Recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue |
title_fullStr | Recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue |
title_full_unstemmed | Recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue |
title_short | Recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue |
title_sort | recurrence quantification analysis for fine-scale characterisation of arrhythmic patterns in cardiac tissue |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10363137/ https://www.ncbi.nlm.nih.gov/pubmed/37481668 http://dx.doi.org/10.1038/s41598-023-38256-w |
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