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Automated Koos Classification of Vestibular Schwannoma

OBJECTIVE: The Koos grading scale is a frequently used classification system for vestibular schwannoma (VS) that accounts for extrameatal tumor dimension and compression of the brain stem. We propose an artificial intelligence (AI) pipeline to fully automate the segmentation and Koos classification...

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Autores principales: Kujawa, Aaron, Dorent, Reuben, Connor, Steve, Oviedova, Anna, Okasha, Mohamed, Grishchuk, Diana, Ourselin, Sebastien, Paddick, Ian, Kitchen, Neil, Vercauteren, Tom, Shapey, Jonathan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365083/
https://www.ncbi.nlm.nih.gov/pubmed/37492670
http://dx.doi.org/10.3389/fradi.2022.837191
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author Kujawa, Aaron
Dorent, Reuben
Connor, Steve
Oviedova, Anna
Okasha, Mohamed
Grishchuk, Diana
Ourselin, Sebastien
Paddick, Ian
Kitchen, Neil
Vercauteren, Tom
Shapey, Jonathan
author_facet Kujawa, Aaron
Dorent, Reuben
Connor, Steve
Oviedova, Anna
Okasha, Mohamed
Grishchuk, Diana
Ourselin, Sebastien
Paddick, Ian
Kitchen, Neil
Vercauteren, Tom
Shapey, Jonathan
author_sort Kujawa, Aaron
collection PubMed
description OBJECTIVE: The Koos grading scale is a frequently used classification system for vestibular schwannoma (VS) that accounts for extrameatal tumor dimension and compression of the brain stem. We propose an artificial intelligence (AI) pipeline to fully automate the segmentation and Koos classification of VS from MRI to improve clinical workflow and facilitate patient management. METHODS: We propose a method for Koos classification that does not only rely on available images but also on automatically generated segmentations. Artificial neural networks were trained and tested based on manual tumor segmentations and ground truth Koos grades of contrast-enhanced T1-weighted (ceT1) and high-resolution T2-weighted (hrT2) MR images from subjects with a single sporadic VS, acquired on a single scanner and with a standardized protocol. The first stage of the pipeline comprises a convolutional neural network (CNN) which can segment the VS and 7 adjacent structures. For the second stage, we propose two complementary approaches that are combined in an ensemble. The first approach applies a second CNN to the segmentation output to predict the Koos grade, the other approach extracts handcrafted features which are passed to a Random Forest classifier. The pipeline results were compared to those achieved by two neurosurgeons. RESULTS: Eligible patients (n = 308) were pseudo-randomly split into 5 groups to evaluate the model performance with 5-fold cross-validation. The weighted macro-averaged mean absolute error (MA-MAE), weighted macro-averaged F1 score (F(1)), and accuracy score of the ensemble model were assessed on the testing sets as follows: MA-MAE = 0.11 ± 0.05, F(1) = 89.3 ± 3.0%, accuracy = 89.3 ± 2.9%, which was comparable to the average performance of two neurosurgeons: MA-MAE = 0.11 ± 0.08, F(1) = 89.1 ± 5.2, accuracy = 88.6 ± 5.8%. Inter-rater reliability was assessed by calculating Fleiss' generalized kappa (k = 0.68) based on all 308 cases, and intra-rater reliabilities of annotator 1 (k = 0.95) and annotator 2 (k = 0.82) were calculated according to the weighted kappa metric with quadratic (Fleiss-Cohen) weights based on 15 randomly selected cases. CONCLUSIONS: We developed the first AI framework to automatically classify VS according to the Koos scale. The excellent results show that the accuracy of the framework is comparable to that of neurosurgeons and may therefore facilitate management of patients with VS. The models, code, and ground truth Koos grades for a subset of publicly available images (n = 188) will be released upon publication.
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spelling pubmed-103650832023-07-25 Automated Koos Classification of Vestibular Schwannoma Kujawa, Aaron Dorent, Reuben Connor, Steve Oviedova, Anna Okasha, Mohamed Grishchuk, Diana Ourselin, Sebastien Paddick, Ian Kitchen, Neil Vercauteren, Tom Shapey, Jonathan Front Radiol Radiology OBJECTIVE: The Koos grading scale is a frequently used classification system for vestibular schwannoma (VS) that accounts for extrameatal tumor dimension and compression of the brain stem. We propose an artificial intelligence (AI) pipeline to fully automate the segmentation and Koos classification of VS from MRI to improve clinical workflow and facilitate patient management. METHODS: We propose a method for Koos classification that does not only rely on available images but also on automatically generated segmentations. Artificial neural networks were trained and tested based on manual tumor segmentations and ground truth Koos grades of contrast-enhanced T1-weighted (ceT1) and high-resolution T2-weighted (hrT2) MR images from subjects with a single sporadic VS, acquired on a single scanner and with a standardized protocol. The first stage of the pipeline comprises a convolutional neural network (CNN) which can segment the VS and 7 adjacent structures. For the second stage, we propose two complementary approaches that are combined in an ensemble. The first approach applies a second CNN to the segmentation output to predict the Koos grade, the other approach extracts handcrafted features which are passed to a Random Forest classifier. The pipeline results were compared to those achieved by two neurosurgeons. RESULTS: Eligible patients (n = 308) were pseudo-randomly split into 5 groups to evaluate the model performance with 5-fold cross-validation. The weighted macro-averaged mean absolute error (MA-MAE), weighted macro-averaged F1 score (F(1)), and accuracy score of the ensemble model were assessed on the testing sets as follows: MA-MAE = 0.11 ± 0.05, F(1) = 89.3 ± 3.0%, accuracy = 89.3 ± 2.9%, which was comparable to the average performance of two neurosurgeons: MA-MAE = 0.11 ± 0.08, F(1) = 89.1 ± 5.2, accuracy = 88.6 ± 5.8%. Inter-rater reliability was assessed by calculating Fleiss' generalized kappa (k = 0.68) based on all 308 cases, and intra-rater reliabilities of annotator 1 (k = 0.95) and annotator 2 (k = 0.82) were calculated according to the weighted kappa metric with quadratic (Fleiss-Cohen) weights based on 15 randomly selected cases. CONCLUSIONS: We developed the first AI framework to automatically classify VS according to the Koos scale. The excellent results show that the accuracy of the framework is comparable to that of neurosurgeons and may therefore facilitate management of patients with VS. The models, code, and ground truth Koos grades for a subset of publicly available images (n = 188) will be released upon publication. Frontiers Media S.A. 2022-03-10 /pmc/articles/PMC10365083/ /pubmed/37492670 http://dx.doi.org/10.3389/fradi.2022.837191 Text en Copyright © 2022 Kujawa, Dorent, Connor, Oviedova, Okasha, Grishchuk, Ourselin, Paddick, Kitchen, Vercauteren and Shapey. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Radiology
Kujawa, Aaron
Dorent, Reuben
Connor, Steve
Oviedova, Anna
Okasha, Mohamed
Grishchuk, Diana
Ourselin, Sebastien
Paddick, Ian
Kitchen, Neil
Vercauteren, Tom
Shapey, Jonathan
Automated Koos Classification of Vestibular Schwannoma
title Automated Koos Classification of Vestibular Schwannoma
title_full Automated Koos Classification of Vestibular Schwannoma
title_fullStr Automated Koos Classification of Vestibular Schwannoma
title_full_unstemmed Automated Koos Classification of Vestibular Schwannoma
title_short Automated Koos Classification of Vestibular Schwannoma
title_sort automated koos classification of vestibular schwannoma
topic Radiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365083/
https://www.ncbi.nlm.nih.gov/pubmed/37492670
http://dx.doi.org/10.3389/fradi.2022.837191
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