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Radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with PD-1/PD-L1 inhibitors for advanced NSCLC
INTRODUCTION: In this study, we aim to build radiomics and multiomics models based on transcriptomics and radiomics to predict the response from patients treated with the PD-L1 inhibitor. MATERIALS AND METHODS: One hundred and ninety-five patients treated with PD-1/PD-L1 inhibitors were included. Fo...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365090/ https://www.ncbi.nlm.nih.gov/pubmed/37492391 http://dx.doi.org/10.3389/fradi.2023.1168448 |
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author | Bouhamama, Amine Leporq, Benjamin Faraz, Khuram Foy, Jean-Philippe Boussageon, Maxime Pérol, Maurice Ortiz-Cuaran, Sandra Ghiringhelli, François Saintigny, Pierre Beuf, Olivier Pilleul, Frank |
author_facet | Bouhamama, Amine Leporq, Benjamin Faraz, Khuram Foy, Jean-Philippe Boussageon, Maxime Pérol, Maurice Ortiz-Cuaran, Sandra Ghiringhelli, François Saintigny, Pierre Beuf, Olivier Pilleul, Frank |
author_sort | Bouhamama, Amine |
collection | PubMed |
description | INTRODUCTION: In this study, we aim to build radiomics and multiomics models based on transcriptomics and radiomics to predict the response from patients treated with the PD-L1 inhibitor. MATERIALS AND METHODS: One hundred and ninety-five patients treated with PD-1/PD-L1 inhibitors were included. For all patients, 342 radiomic features were extracted from pretreatment computed tomography scans. The training set was built with 110 patients treated at the Léon Bérard Cancer Center. An independent validation cohort was built with the 85 patients treated in Dijon. The two sets were dichotomized into two classes, patients with disease control and those considered non-responders, in order to predict the disease control at 3 months. Various models were trained with different feature selection methods, and different classifiers were evaluated to build the models. In a second exploratory step, we used transcriptomics to enrich the database and develop a multiomic signature of response to immunotherapy in a 54-patient subgroup. Finally, we considered the HOT/COLD status. We first trained a radiomic model to predict the HOT/COLD status and then prototyped a hybrid model integrating radiomics and the HOT/COLD status to predict the response to immunotherapy. RESULTS: Radiomic signature for 3 months’ progression-free survival (PFS) classification: The most predictive model had an area under the receiver operating characteristic curve (AUROC) of 0.94 on the training set and 0.65 on the external validation set. This model was obtained with the t-test selection method and with a support vector machine (SVM) classifier. Multiomic signature for PFS classification: The most predictive model had an AUROC of 0.95 on the training set and 0.99 on the validation set. Radiomic model to predict the HOT/COLD status: the most predictive model had an AUROC of 0.93 on the training set and 0.86 on the validation set. HOT/COLD radiomic hybrid model for PFS classification: the most predictive model had an AUROC of 0.93 on the training set and 0.90 on the validation set. CONCLUSION: In conclusion, radiomics could be used to predict the response to immunotherapy in non-small-cell lung cancer patients. The use of transcriptomics or the HOT/COLD status, together with radiomics, may improve the working of the prediction models. |
format | Online Article Text |
id | pubmed-10365090 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103650902023-07-25 Radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with PD-1/PD-L1 inhibitors for advanced NSCLC Bouhamama, Amine Leporq, Benjamin Faraz, Khuram Foy, Jean-Philippe Boussageon, Maxime Pérol, Maurice Ortiz-Cuaran, Sandra Ghiringhelli, François Saintigny, Pierre Beuf, Olivier Pilleul, Frank Front Radiol Radiology INTRODUCTION: In this study, we aim to build radiomics and multiomics models based on transcriptomics and radiomics to predict the response from patients treated with the PD-L1 inhibitor. MATERIALS AND METHODS: One hundred and ninety-five patients treated with PD-1/PD-L1 inhibitors were included. For all patients, 342 radiomic features were extracted from pretreatment computed tomography scans. The training set was built with 110 patients treated at the Léon Bérard Cancer Center. An independent validation cohort was built with the 85 patients treated in Dijon. The two sets were dichotomized into two classes, patients with disease control and those considered non-responders, in order to predict the disease control at 3 months. Various models were trained with different feature selection methods, and different classifiers were evaluated to build the models. In a second exploratory step, we used transcriptomics to enrich the database and develop a multiomic signature of response to immunotherapy in a 54-patient subgroup. Finally, we considered the HOT/COLD status. We first trained a radiomic model to predict the HOT/COLD status and then prototyped a hybrid model integrating radiomics and the HOT/COLD status to predict the response to immunotherapy. RESULTS: Radiomic signature for 3 months’ progression-free survival (PFS) classification: The most predictive model had an area under the receiver operating characteristic curve (AUROC) of 0.94 on the training set and 0.65 on the external validation set. This model was obtained with the t-test selection method and with a support vector machine (SVM) classifier. Multiomic signature for PFS classification: The most predictive model had an AUROC of 0.95 on the training set and 0.99 on the validation set. Radiomic model to predict the HOT/COLD status: the most predictive model had an AUROC of 0.93 on the training set and 0.86 on the validation set. HOT/COLD radiomic hybrid model for PFS classification: the most predictive model had an AUROC of 0.93 on the training set and 0.90 on the validation set. CONCLUSION: In conclusion, radiomics could be used to predict the response to immunotherapy in non-small-cell lung cancer patients. The use of transcriptomics or the HOT/COLD status, together with radiomics, may improve the working of the prediction models. Frontiers Media S.A. 2023-05-03 /pmc/articles/PMC10365090/ /pubmed/37492391 http://dx.doi.org/10.3389/fradi.2023.1168448 Text en © 2023 Bouhamama, Leporq, Faraz, Foy, Boussageon, Pérol, Ortiz-Cuaran, Ghiringhelli, Saintigny, Beuf and Pilleul. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Radiology Bouhamama, Amine Leporq, Benjamin Faraz, Khuram Foy, Jean-Philippe Boussageon, Maxime Pérol, Maurice Ortiz-Cuaran, Sandra Ghiringhelli, François Saintigny, Pierre Beuf, Olivier Pilleul, Frank Radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with PD-1/PD-L1 inhibitors for advanced NSCLC |
title | Radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with PD-1/PD-L1 inhibitors for advanced NSCLC |
title_full | Radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with PD-1/PD-L1 inhibitors for advanced NSCLC |
title_fullStr | Radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with PD-1/PD-L1 inhibitors for advanced NSCLC |
title_full_unstemmed | Radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with PD-1/PD-L1 inhibitors for advanced NSCLC |
title_short | Radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with PD-1/PD-L1 inhibitors for advanced NSCLC |
title_sort | radiomics combined with transcriptomics to predict response to immunotherapy from patients treated with pd-1/pd-l1 inhibitors for advanced nsclc |
topic | Radiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365090/ https://www.ncbi.nlm.nih.gov/pubmed/37492391 http://dx.doi.org/10.3389/fradi.2023.1168448 |
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