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Adversarial counterfactual augmentation: application in Alzheimer’s disease classification
Due to the limited availability of medical data, deep learning approaches for medical image analysis tend to generalise poorly to unseen data. Augmenting data during training with random transformations has been shown to help and became a ubiquitous technique for training neural networks. Here, we p...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365114/ https://www.ncbi.nlm.nih.gov/pubmed/37492661 http://dx.doi.org/10.3389/fradi.2022.1039160 |
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author | Xia, Tian Sanchez, Pedro Qin, Chen Tsaftaris, Sotirios A. |
author_facet | Xia, Tian Sanchez, Pedro Qin, Chen Tsaftaris, Sotirios A. |
author_sort | Xia, Tian |
collection | PubMed |
description | Due to the limited availability of medical data, deep learning approaches for medical image analysis tend to generalise poorly to unseen data. Augmenting data during training with random transformations has been shown to help and became a ubiquitous technique for training neural networks. Here, we propose a novel adversarial counterfactual augmentation scheme that aims at finding the most effective synthesised images to improve downstream tasks, given a pre-trained generative model. Specifically, we construct an adversarial game where we update the input conditional factor of the generator and the downstream classifier with gradient backpropagation alternatively and iteratively. This can be viewed as finding the ‘weakness’ of the classifier and purposely forcing it to overcome its weakness via the generative model. To demonstrate the effectiveness of the proposed approach, we validate the method with the classification of Alzheimer’s Disease (AD) as a downstream task. The pre-trained generative model synthesises brain images using age as conditional factor. Extensive experiments and ablation studies have been performed to show that the proposed approach improves classification performance and has potential to alleviate spurious correlations and catastrophic forgetting. Code: https://github.com/xiat0616/adversarial_counterfactual_augmentation |
format | Online Article Text |
id | pubmed-10365114 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103651142023-07-25 Adversarial counterfactual augmentation: application in Alzheimer’s disease classification Xia, Tian Sanchez, Pedro Qin, Chen Tsaftaris, Sotirios A. Front Radiol Radiology Due to the limited availability of medical data, deep learning approaches for medical image analysis tend to generalise poorly to unseen data. Augmenting data during training with random transformations has been shown to help and became a ubiquitous technique for training neural networks. Here, we propose a novel adversarial counterfactual augmentation scheme that aims at finding the most effective synthesised images to improve downstream tasks, given a pre-trained generative model. Specifically, we construct an adversarial game where we update the input conditional factor of the generator and the downstream classifier with gradient backpropagation alternatively and iteratively. This can be viewed as finding the ‘weakness’ of the classifier and purposely forcing it to overcome its weakness via the generative model. To demonstrate the effectiveness of the proposed approach, we validate the method with the classification of Alzheimer’s Disease (AD) as a downstream task. The pre-trained generative model synthesises brain images using age as conditional factor. Extensive experiments and ablation studies have been performed to show that the proposed approach improves classification performance and has potential to alleviate spurious correlations and catastrophic forgetting. Code: https://github.com/xiat0616/adversarial_counterfactual_augmentation Frontiers Media S.A. 2022-11-30 /pmc/articles/PMC10365114/ /pubmed/37492661 http://dx.doi.org/10.3389/fradi.2022.1039160 Text en © 2022 Xia, Sanchez, Qin and Tsaftaris. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Radiology Xia, Tian Sanchez, Pedro Qin, Chen Tsaftaris, Sotirios A. Adversarial counterfactual augmentation: application in Alzheimer’s disease classification |
title | Adversarial counterfactual augmentation: application in Alzheimer’s disease classification |
title_full | Adversarial counterfactual augmentation: application in Alzheimer’s disease classification |
title_fullStr | Adversarial counterfactual augmentation: application in Alzheimer’s disease classification |
title_full_unstemmed | Adversarial counterfactual augmentation: application in Alzheimer’s disease classification |
title_short | Adversarial counterfactual augmentation: application in Alzheimer’s disease classification |
title_sort | adversarial counterfactual augmentation: application in alzheimer’s disease classification |
topic | Radiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365114/ https://www.ncbi.nlm.nih.gov/pubmed/37492661 http://dx.doi.org/10.3389/fradi.2022.1039160 |
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