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Adversarial counterfactual augmentation: application in Alzheimer’s disease classification

Due to the limited availability of medical data, deep learning approaches for medical image analysis tend to generalise poorly to unseen data. Augmenting data during training with random transformations has been shown to help and became a ubiquitous technique for training neural networks. Here, we p...

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Autores principales: Xia, Tian, Sanchez, Pedro, Qin, Chen, Tsaftaris, Sotirios A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365114/
https://www.ncbi.nlm.nih.gov/pubmed/37492661
http://dx.doi.org/10.3389/fradi.2022.1039160
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author Xia, Tian
Sanchez, Pedro
Qin, Chen
Tsaftaris, Sotirios A.
author_facet Xia, Tian
Sanchez, Pedro
Qin, Chen
Tsaftaris, Sotirios A.
author_sort Xia, Tian
collection PubMed
description Due to the limited availability of medical data, deep learning approaches for medical image analysis tend to generalise poorly to unseen data. Augmenting data during training with random transformations has been shown to help and became a ubiquitous technique for training neural networks. Here, we propose a novel adversarial counterfactual augmentation scheme that aims at finding the most effective synthesised images to improve downstream tasks, given a pre-trained generative model. Specifically, we construct an adversarial game where we update the input conditional factor of the generator and the downstream classifier with gradient backpropagation alternatively and iteratively. This can be viewed as finding the ‘weakness’ of the classifier and purposely forcing it to overcome its weakness via the generative model. To demonstrate the effectiveness of the proposed approach, we validate the method with the classification of Alzheimer’s Disease (AD) as a downstream task. The pre-trained generative model synthesises brain images using age as conditional factor. Extensive experiments and ablation studies have been performed to show that the proposed approach improves classification performance and has potential to alleviate spurious correlations and catastrophic forgetting. Code: https://github.com/xiat0616/adversarial_counterfactual_augmentation
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spelling pubmed-103651142023-07-25 Adversarial counterfactual augmentation: application in Alzheimer’s disease classification Xia, Tian Sanchez, Pedro Qin, Chen Tsaftaris, Sotirios A. Front Radiol Radiology Due to the limited availability of medical data, deep learning approaches for medical image analysis tend to generalise poorly to unseen data. Augmenting data during training with random transformations has been shown to help and became a ubiquitous technique for training neural networks. Here, we propose a novel adversarial counterfactual augmentation scheme that aims at finding the most effective synthesised images to improve downstream tasks, given a pre-trained generative model. Specifically, we construct an adversarial game where we update the input conditional factor of the generator and the downstream classifier with gradient backpropagation alternatively and iteratively. This can be viewed as finding the ‘weakness’ of the classifier and purposely forcing it to overcome its weakness via the generative model. To demonstrate the effectiveness of the proposed approach, we validate the method with the classification of Alzheimer’s Disease (AD) as a downstream task. The pre-trained generative model synthesises brain images using age as conditional factor. Extensive experiments and ablation studies have been performed to show that the proposed approach improves classification performance and has potential to alleviate spurious correlations and catastrophic forgetting. Code: https://github.com/xiat0616/adversarial_counterfactual_augmentation Frontiers Media S.A. 2022-11-30 /pmc/articles/PMC10365114/ /pubmed/37492661 http://dx.doi.org/10.3389/fradi.2022.1039160 Text en © 2022 Xia, Sanchez, Qin and Tsaftaris. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Radiology
Xia, Tian
Sanchez, Pedro
Qin, Chen
Tsaftaris, Sotirios A.
Adversarial counterfactual augmentation: application in Alzheimer’s disease classification
title Adversarial counterfactual augmentation: application in Alzheimer’s disease classification
title_full Adversarial counterfactual augmentation: application in Alzheimer’s disease classification
title_fullStr Adversarial counterfactual augmentation: application in Alzheimer’s disease classification
title_full_unstemmed Adversarial counterfactual augmentation: application in Alzheimer’s disease classification
title_short Adversarial counterfactual augmentation: application in Alzheimer’s disease classification
title_sort adversarial counterfactual augmentation: application in alzheimer’s disease classification
topic Radiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365114/
https://www.ncbi.nlm.nih.gov/pubmed/37492661
http://dx.doi.org/10.3389/fradi.2022.1039160
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