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Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation
Medical imaging data annotation is expensive and time-consuming. Supervised deep learning approaches may encounter overfitting if trained with limited medical data, and further affect the robustness of computer-aided diagnosis (CAD) on CT scans collected by various scanner vendors. Additionally, the...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365286/ https://www.ncbi.nlm.nih.gov/pubmed/37492669 http://dx.doi.org/10.3389/fradi.2022.1041518 |
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author | Liu, Jingya Cao, Liangliang Akin, Oguz Tian, Yingli |
author_facet | Liu, Jingya Cao, Liangliang Akin, Oguz Tian, Yingli |
author_sort | Liu, Jingya |
collection | PubMed |
description | Medical imaging data annotation is expensive and time-consuming. Supervised deep learning approaches may encounter overfitting if trained with limited medical data, and further affect the robustness of computer-aided diagnosis (CAD) on CT scans collected by various scanner vendors. Additionally, the high false-positive rate in automatic lung nodule detection methods prevents their applications in daily clinical routine diagnosis. To tackle these issues, we first introduce a novel self-learning schema to train a pre-trained model by learning rich feature representatives from large-scale unlabeled data without extra annotation, which guarantees a consistent detection performance over novel datasets. Then, a 3D feature pyramid network (3DFPN) is proposed for high-sensitivity nodule detection by extracting multi-scale features, where the weights of the backbone network are initialized by the pre-trained model and then fine-tuned in a supervised manner. Further, a High Sensitivity and Specificity (HS [Formula: see text]) network is proposed to reduce false positives by tracking the appearance changes among continuous CT slices on Location History Images (LHI) for the detected nodule candidates. The proposed method’s performance and robustness are evaluated on several publicly available datasets, including LUNA16, SPIE-AAPM, LungTIME, and HMS. Our proposed detector achieves the state-of-the-art result of [Formula: see text] sensitivity at [Formula: see text] false positive per scan on the LUNA16 dataset. The proposed framework’s generalizability has been evaluated on three additional datasets (i.e., SPIE-AAPM, LungTIME, and HMS) captured by different types of CT scanners. |
format | Online Article Text |
id | pubmed-10365286 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103652862023-07-25 Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation Liu, Jingya Cao, Liangliang Akin, Oguz Tian, Yingli Front Radiol Radiology Medical imaging data annotation is expensive and time-consuming. Supervised deep learning approaches may encounter overfitting if trained with limited medical data, and further affect the robustness of computer-aided diagnosis (CAD) on CT scans collected by various scanner vendors. Additionally, the high false-positive rate in automatic lung nodule detection methods prevents their applications in daily clinical routine diagnosis. To tackle these issues, we first introduce a novel self-learning schema to train a pre-trained model by learning rich feature representatives from large-scale unlabeled data without extra annotation, which guarantees a consistent detection performance over novel datasets. Then, a 3D feature pyramid network (3DFPN) is proposed for high-sensitivity nodule detection by extracting multi-scale features, where the weights of the backbone network are initialized by the pre-trained model and then fine-tuned in a supervised manner. Further, a High Sensitivity and Specificity (HS [Formula: see text]) network is proposed to reduce false positives by tracking the appearance changes among continuous CT slices on Location History Images (LHI) for the detected nodule candidates. The proposed method’s performance and robustness are evaluated on several publicly available datasets, including LUNA16, SPIE-AAPM, LungTIME, and HMS. Our proposed detector achieves the state-of-the-art result of [Formula: see text] sensitivity at [Formula: see text] false positive per scan on the LUNA16 dataset. The proposed framework’s generalizability has been evaluated on three additional datasets (i.e., SPIE-AAPM, LungTIME, and HMS) captured by different types of CT scanners. Frontiers Media S.A. 2022-12-15 /pmc/articles/PMC10365286/ /pubmed/37492669 http://dx.doi.org/10.3389/fradi.2022.1041518 Text en © 2022 Liu, Cao, Akin and Tian. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Radiology Liu, Jingya Cao, Liangliang Akin, Oguz Tian, Yingli Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation |
title | Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation |
title_full | Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation |
title_fullStr | Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation |
title_full_unstemmed | Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation |
title_short | Robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation |
title_sort | robust and accurate pulmonary nodule detection with self-supervised feature learning on domain adaptation |
topic | Radiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365286/ https://www.ncbi.nlm.nih.gov/pubmed/37492669 http://dx.doi.org/10.3389/fradi.2022.1041518 |
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