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Chemoinformatics approach to design and develop vanillin analogs as COX-1 inhibitor

BACKGROUND: Coronary Heart Disease (CHD), commonly known as the silent killer, impacted the severity of COVID-19 patients during the pandemic era. Thrombosis or blood clots create the buildup of plaque on the coronary artery walls of the heart, which leads to coronary heart disease. Cyclooxygenase 1...

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Autores principales: Norhayati, Ekowati, Juni, Diyah, Nuzul Wahyuning, Tejo, Bimo Ario, Ahmed, Samar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PAGEPress Publications, Pavia, Italy 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365673/
https://www.ncbi.nlm.nih.gov/pubmed/37492541
http://dx.doi.org/10.4081/jphia.2023.2517
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author Norhayati
Ekowati, Juni
Diyah, Nuzul Wahyuning
Tejo, Bimo Ario
Ahmed, Samar
author_facet Norhayati
Ekowati, Juni
Diyah, Nuzul Wahyuning
Tejo, Bimo Ario
Ahmed, Samar
author_sort Norhayati
collection PubMed
description BACKGROUND: Coronary Heart Disease (CHD), commonly known as the silent killer, impacted the severity of COVID-19 patients during the pandemic era. Thrombosis or blood clots create the buildup of plaque on the coronary artery walls of the heart, which leads to coronary heart disease. Cyclooxygenase 1 (COX-1) is involved in the production of prostacyclin by systemic arteries; hence, inhibiting the COX-1 enzyme can prevent platelet reactivity mediated by prostacyclin. To obtain good health and well-being, the research of discovery of new drugs for anti-thrombotic still continue. OBJECTIVE: This study aims to predict the potential of 17 compounds owned by the vanillin analog to COX-1 receptor using in silico. METHODS: This research employed a molecular docking analysis using Toshiba hardware and AutoDock Tools version 1.5.7, ChemDraw Professional 16.0, Discovery Studio, UCSF Chimera software, SWISSADME and pKCSM, a native ligand from COX- 1 (PDB ID: 1CQE) was validated. RESULTS: The validation result indicated that the RMSD was <2 Å. The 4-formyl-2-methoxyphenyl benzoate compound had the lowest binding energy in COX-1 inhibition with a value of -7.70 Å. All vanillin derivatives show good intestinal absorption, and the predicted toxicity indicated that they were non-hepatotoxic. All these compounds have the potential to be effective antithrombotic treatments when consumed orally. CONCLUSION: In comparison to other vanillin derivative compounds, 4-formyl-2-methoxyphenyl benzoate has the lowest binding energy value; hence, this analog can continue to be synthesized and its potential as an antithrombotic agent might be confirmed by in vivo studies.
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spelling pubmed-103656732023-07-25 Chemoinformatics approach to design and develop vanillin analogs as COX-1 inhibitor Norhayati Ekowati, Juni Diyah, Nuzul Wahyuning Tejo, Bimo Ario Ahmed, Samar J Public Health Afr Article BACKGROUND: Coronary Heart Disease (CHD), commonly known as the silent killer, impacted the severity of COVID-19 patients during the pandemic era. Thrombosis or blood clots create the buildup of plaque on the coronary artery walls of the heart, which leads to coronary heart disease. Cyclooxygenase 1 (COX-1) is involved in the production of prostacyclin by systemic arteries; hence, inhibiting the COX-1 enzyme can prevent platelet reactivity mediated by prostacyclin. To obtain good health and well-being, the research of discovery of new drugs for anti-thrombotic still continue. OBJECTIVE: This study aims to predict the potential of 17 compounds owned by the vanillin analog to COX-1 receptor using in silico. METHODS: This research employed a molecular docking analysis using Toshiba hardware and AutoDock Tools version 1.5.7, ChemDraw Professional 16.0, Discovery Studio, UCSF Chimera software, SWISSADME and pKCSM, a native ligand from COX- 1 (PDB ID: 1CQE) was validated. RESULTS: The validation result indicated that the RMSD was <2 Å. The 4-formyl-2-methoxyphenyl benzoate compound had the lowest binding energy in COX-1 inhibition with a value of -7.70 Å. All vanillin derivatives show good intestinal absorption, and the predicted toxicity indicated that they were non-hepatotoxic. All these compounds have the potential to be effective antithrombotic treatments when consumed orally. CONCLUSION: In comparison to other vanillin derivative compounds, 4-formyl-2-methoxyphenyl benzoate has the lowest binding energy value; hence, this analog can continue to be synthesized and its potential as an antithrombotic agent might be confirmed by in vivo studies. PAGEPress Publications, Pavia, Italy 2023-03-16 /pmc/articles/PMC10365673/ /pubmed/37492541 http://dx.doi.org/10.4081/jphia.2023.2517 Text en ©Copyright: the Author(s) https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution Noncommercial License (by-nc 4.0) which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
spellingShingle Article
Norhayati
Ekowati, Juni
Diyah, Nuzul Wahyuning
Tejo, Bimo Ario
Ahmed, Samar
Chemoinformatics approach to design and develop vanillin analogs as COX-1 inhibitor
title Chemoinformatics approach to design and develop vanillin analogs as COX-1 inhibitor
title_full Chemoinformatics approach to design and develop vanillin analogs as COX-1 inhibitor
title_fullStr Chemoinformatics approach to design and develop vanillin analogs as COX-1 inhibitor
title_full_unstemmed Chemoinformatics approach to design and develop vanillin analogs as COX-1 inhibitor
title_short Chemoinformatics approach to design and develop vanillin analogs as COX-1 inhibitor
title_sort chemoinformatics approach to design and develop vanillin analogs as cox-1 inhibitor
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365673/
https://www.ncbi.nlm.nih.gov/pubmed/37492541
http://dx.doi.org/10.4081/jphia.2023.2517
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