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A perspective on the sharing of docking data

Computational approaches are nowadays largely applied in drug discovery projects. Among these, molecular docking is the most used for hit identification against a drug target protein. However, many scientists in the field shed light on the lack of availability and reproducibility of the data obtaine...

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Detalles Bibliográficos
Autores principales: Aci-Sèche, Samia, Bourg, Stéphane, Bonnet, Pascal, Rebehmed, Joseph, de Brevern, Alexandre G., Diharce, Julien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365938/
https://www.ncbi.nlm.nih.gov/pubmed/37492229
http://dx.doi.org/10.1016/j.dib.2023.109386
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author Aci-Sèche, Samia
Bourg, Stéphane
Bonnet, Pascal
Rebehmed, Joseph
de Brevern, Alexandre G.
Diharce, Julien
author_facet Aci-Sèche, Samia
Bourg, Stéphane
Bonnet, Pascal
Rebehmed, Joseph
de Brevern, Alexandre G.
Diharce, Julien
author_sort Aci-Sèche, Samia
collection PubMed
description Computational approaches are nowadays largely applied in drug discovery projects. Among these, molecular docking is the most used for hit identification against a drug target protein. However, many scientists in the field shed light on the lack of availability and reproducibility of the data obtained from such studies to the whole community. Consequently, sustaining and developing the efforts toward a large and fully transparent sharing of those data could be beneficial for all researchers in drug discovery. The purpose of this article is first to propose guidelines and recommendations on the appropriate way to conduct virtual screening experiments and second to depict the current state of sharing molecular docking data. In conclusion, we have explored and proposed several prospects to enhance data sharing from docking experiment that could be developed in the foreseeable future.
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spelling pubmed-103659382023-07-25 A perspective on the sharing of docking data Aci-Sèche, Samia Bourg, Stéphane Bonnet, Pascal Rebehmed, Joseph de Brevern, Alexandre G. Diharce, Julien Data Brief Perspective Article Computational approaches are nowadays largely applied in drug discovery projects. Among these, molecular docking is the most used for hit identification against a drug target protein. However, many scientists in the field shed light on the lack of availability and reproducibility of the data obtained from such studies to the whole community. Consequently, sustaining and developing the efforts toward a large and fully transparent sharing of those data could be beneficial for all researchers in drug discovery. The purpose of this article is first to propose guidelines and recommendations on the appropriate way to conduct virtual screening experiments and second to depict the current state of sharing molecular docking data. In conclusion, we have explored and proposed several prospects to enhance data sharing from docking experiment that could be developed in the foreseeable future. Elsevier 2023-07-07 /pmc/articles/PMC10365938/ /pubmed/37492229 http://dx.doi.org/10.1016/j.dib.2023.109386 Text en © 2023 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Perspective Article
Aci-Sèche, Samia
Bourg, Stéphane
Bonnet, Pascal
Rebehmed, Joseph
de Brevern, Alexandre G.
Diharce, Julien
A perspective on the sharing of docking data
title A perspective on the sharing of docking data
title_full A perspective on the sharing of docking data
title_fullStr A perspective on the sharing of docking data
title_full_unstemmed A perspective on the sharing of docking data
title_short A perspective on the sharing of docking data
title_sort perspective on the sharing of docking data
topic Perspective Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10365938/
https://www.ncbi.nlm.nih.gov/pubmed/37492229
http://dx.doi.org/10.1016/j.dib.2023.109386
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