Cargando…
Identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining
Osteonecrosis of the femoral head (ONFH) is a multifactorial disease leading to severely limited function. By far, the etiology and pathogenesis of ONFH are not fully understood, and surgery is the only effective way to treat ONFH. This study aims to identify hub genes and therapeutic drugs in ONFH....
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366127/ https://www.ncbi.nlm.nih.gov/pubmed/37488209 http://dx.doi.org/10.1038/s41598-023-39258-4 |
_version_ | 1785077103053504512 |
---|---|
author | Tang, Lan Li, Bin Su, Qiuming Chen, Xi He, Rongxin |
author_facet | Tang, Lan Li, Bin Su, Qiuming Chen, Xi He, Rongxin |
author_sort | Tang, Lan |
collection | PubMed |
description | Osteonecrosis of the femoral head (ONFH) is a multifactorial disease leading to severely limited function. By far, the etiology and pathogenesis of ONFH are not fully understood, and surgery is the only effective way to treat ONFH. This study aims to identify hub genes and therapeutic drugs in ONFH. Two gene expression profiles were downloaded from the gene expression omnibus database, and the hub genes and candidate drugs for ONFH were identified through integrated bioinformatics analysis and cross-validated by literature mining. A total of 159 DEGs were identified. PTGS2, LRRK2, ANXA5, IGF1R, MCL1, TIMP2, LYN, CD68, CBL, and RUNX2 were validated as 10 hub genes, which has considerable implications for future genetic research and related research fields of ONFH. Our findings indicate that 85 drugs interact with ONFH, with most drugs exhibiting a positive impact on ONFH by promoting osteogenesis and angiogenesis or inhibiting microcirculation embolism, rather than being anti-inflammatory. Our study provides novel insights into the pathogenesis, prevention, and treatment of ONFH. |
format | Online Article Text |
id | pubmed-10366127 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103661272023-07-26 Identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining Tang, Lan Li, Bin Su, Qiuming Chen, Xi He, Rongxin Sci Rep Article Osteonecrosis of the femoral head (ONFH) is a multifactorial disease leading to severely limited function. By far, the etiology and pathogenesis of ONFH are not fully understood, and surgery is the only effective way to treat ONFH. This study aims to identify hub genes and therapeutic drugs in ONFH. Two gene expression profiles were downloaded from the gene expression omnibus database, and the hub genes and candidate drugs for ONFH were identified through integrated bioinformatics analysis and cross-validated by literature mining. A total of 159 DEGs were identified. PTGS2, LRRK2, ANXA5, IGF1R, MCL1, TIMP2, LYN, CD68, CBL, and RUNX2 were validated as 10 hub genes, which has considerable implications for future genetic research and related research fields of ONFH. Our findings indicate that 85 drugs interact with ONFH, with most drugs exhibiting a positive impact on ONFH by promoting osteogenesis and angiogenesis or inhibiting microcirculation embolism, rather than being anti-inflammatory. Our study provides novel insights into the pathogenesis, prevention, and treatment of ONFH. Nature Publishing Group UK 2023-07-24 /pmc/articles/PMC10366127/ /pubmed/37488209 http://dx.doi.org/10.1038/s41598-023-39258-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Tang, Lan Li, Bin Su, Qiuming Chen, Xi He, Rongxin Identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining |
title | Identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining |
title_full | Identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining |
title_fullStr | Identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining |
title_full_unstemmed | Identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining |
title_short | Identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining |
title_sort | identification of hub genes and therapeutic drugs in osteonecrosis of the femoral head through integrated bioinformatics analysis and literature mining |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366127/ https://www.ncbi.nlm.nih.gov/pubmed/37488209 http://dx.doi.org/10.1038/s41598-023-39258-4 |
work_keys_str_mv | AT tanglan identificationofhubgenesandtherapeuticdrugsinosteonecrosisofthefemoralheadthroughintegratedbioinformaticsanalysisandliteraturemining AT libin identificationofhubgenesandtherapeuticdrugsinosteonecrosisofthefemoralheadthroughintegratedbioinformaticsanalysisandliteraturemining AT suqiuming identificationofhubgenesandtherapeuticdrugsinosteonecrosisofthefemoralheadthroughintegratedbioinformaticsanalysisandliteraturemining AT chenxi identificationofhubgenesandtherapeuticdrugsinosteonecrosisofthefemoralheadthroughintegratedbioinformaticsanalysisandliteraturemining AT herongxin identificationofhubgenesandtherapeuticdrugsinosteonecrosisofthefemoralheadthroughintegratedbioinformaticsanalysisandliteraturemining |