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Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses

BACKGROUND: In fungi, aminoadipate reductase converts 2-aminoadipate to 2-aminoadipate 6-semialdehyde. However, other organisms have no homologue to the aminoadipate reductase gene and this pathway appears to be restricted to fungi. In this study, we designed degenerate primers for polymerase chain...

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Autores principales: An, Kwang-Deuk, Nishida, Hiromi, Miura, Yoshiharu, Yokota, Akira
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2002
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC103663/
https://www.ncbi.nlm.nih.gov/pubmed/11931673
http://dx.doi.org/10.1186/1471-2148-2-6
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author An, Kwang-Deuk
Nishida, Hiromi
Miura, Yoshiharu
Yokota, Akira
author_facet An, Kwang-Deuk
Nishida, Hiromi
Miura, Yoshiharu
Yokota, Akira
author_sort An, Kwang-Deuk
collection PubMed
description BACKGROUND: In fungi, aminoadipate reductase converts 2-aminoadipate to 2-aminoadipate 6-semialdehyde. However, other organisms have no homologue to the aminoadipate reductase gene and this pathway appears to be restricted to fungi. In this study, we designed degenerate primers for polymerase chain reaction (PCR) amplification of a large fragment of the aminoadipate reductase gene for divergent fungi. RESULTS: Using these primers, we amplified DNA fragments from the archiascomycetous yeast Saitoella complicata and the black-koji mold Aspergillus awamori. Based on an alignment of the deduced amino acid sequences, we constructed phylogenetic trees. These trees are consistent with current ascomycete systematics and demonstrate the potential utility of the aminoadipete reductase gene for phylogenetic analyses of fungi. CONCLUSIONS: We believe that the comparison of aminoadipate reductase among species will be useful for molecular ecological and evolutionary studies of fungi, because this enzyme-encoding gene is a fungal-specific gene and generally appears to be single copy.
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spelling pubmed-1036632002-05-02 Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses An, Kwang-Deuk Nishida, Hiromi Miura, Yoshiharu Yokota, Akira BMC Evol Biol Research Article BACKGROUND: In fungi, aminoadipate reductase converts 2-aminoadipate to 2-aminoadipate 6-semialdehyde. However, other organisms have no homologue to the aminoadipate reductase gene and this pathway appears to be restricted to fungi. In this study, we designed degenerate primers for polymerase chain reaction (PCR) amplification of a large fragment of the aminoadipate reductase gene for divergent fungi. RESULTS: Using these primers, we amplified DNA fragments from the archiascomycetous yeast Saitoella complicata and the black-koji mold Aspergillus awamori. Based on an alignment of the deduced amino acid sequences, we constructed phylogenetic trees. These trees are consistent with current ascomycete systematics and demonstrate the potential utility of the aminoadipete reductase gene for phylogenetic analyses of fungi. CONCLUSIONS: We believe that the comparison of aminoadipate reductase among species will be useful for molecular ecological and evolutionary studies of fungi, because this enzyme-encoding gene is a fungal-specific gene and generally appears to be single copy. BioMed Central 2002-04-03 /pmc/articles/PMC103663/ /pubmed/11931673 http://dx.doi.org/10.1186/1471-2148-2-6 Text en Copyright © 2002 An et al; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL.
spellingShingle Research Article
An, Kwang-Deuk
Nishida, Hiromi
Miura, Yoshiharu
Yokota, Akira
Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses
title Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses
title_full Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses
title_fullStr Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses
title_full_unstemmed Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses
title_short Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses
title_sort aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC103663/
https://www.ncbi.nlm.nih.gov/pubmed/11931673
http://dx.doi.org/10.1186/1471-2148-2-6
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