Cargando…
A contamination focused approach for optimizing the single-cell RNA-seq experiment
Droplet-based single-cell RNA-seq (scRNA-seq) data are plagued by ambient contaminations caused by nucleic acid material released by dead and dying cells. This material is mixed into the buffer and is co-encapsulated with cells, leading to a lower signal-to-noise ratio. Although there exist computat...
Autores principales: | Arceneaux, Deronisha, Chen, Zhengyi, Simmons, Alan J., Heiser, Cody N., Southard-Smith, Austin N., Brenan, Michael J., Yang, Yilin, Chen, Bob, Xu, Yanwen, Choi, Eunyoung, Campbell, Joshua D., Liu, Qi, Lau, Ken S. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366499/ https://www.ncbi.nlm.nih.gov/pubmed/37496679 http://dx.doi.org/10.1016/j.isci.2023.107242 |
Ejemplares similares
-
Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools
por: Chen, Bob, et al.
Publicado: (2021) -
Automated quality control and cell identification of droplet-based single-cell data using dropkick
por: Heiser, Cody N., et al.
Publicado: (2021) -
Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms
por: Southard-Smith, Austin N., et al.
Publicado: (2020) -
A Quantitative Framework for Evaluating Single-Cell Data Structure Preservation by Dimensionality Reduction Techniques
por: Heiser, Cody N., et al.
Publicado: (2020) -
Mitofusin-2 mediates doxorubicin sensitivity and acute resistance in Jurkat leukemia cells
por: Decker, Carl W., et al.
Publicado: (2020)