Cargando…

A New and Profitable Protocol to DNA Extraction in Limnospira maxima

Limnospira maxima is a remarkable organism showing great potential as a versatile and sustainable food source, offering a powerful solution to address the pressing issues of malnutrition and undernourishment worldwide. L. maxima contains high amounts of proteins, vitamins, minerals, and essential fa...

Descripción completa

Detalles Bibliográficos
Autores principales: Pineda-Rodriguez, Yirlis Yadeth, Pompelli, Marcelo F., Jarma-Orozco, Alfredo, Rodríguez, Novisel Veitía, Rodriguez-Paez, Luis Alfonso
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366785/
https://www.ncbi.nlm.nih.gov/pubmed/37489429
http://dx.doi.org/10.3390/mps6040062
_version_ 1785077245213147136
author Pineda-Rodriguez, Yirlis Yadeth
Pompelli, Marcelo F.
Jarma-Orozco, Alfredo
Rodríguez, Novisel Veitía
Rodriguez-Paez, Luis Alfonso
author_facet Pineda-Rodriguez, Yirlis Yadeth
Pompelli, Marcelo F.
Jarma-Orozco, Alfredo
Rodríguez, Novisel Veitía
Rodriguez-Paez, Luis Alfonso
author_sort Pineda-Rodriguez, Yirlis Yadeth
collection PubMed
description Limnospira maxima is a remarkable organism showing great potential as a versatile and sustainable food source, offering a powerful solution to address the pressing issues of malnutrition and undernourishment worldwide. L. maxima contains high amounts of proteins, vitamins, minerals, and essential fatty acids. It can be grown in both bioreactors and open systems; however, before considering industrial production, optimization studies of the cultivation must be conducted to obtain knowledge about the ideal environmental conditions. Additionally, for the molecular typing of L. maxima strains and their industrial scaling, high-quality and large quantity DNA extraction is required. Notwithstanding, DNA extraction from L. maxima can be challenging due to the low amount of DNA in cells and the presence of difficult-to-remove substances such as polysaccharides and polyphenols. In this study, the quality and quantity of DNA extracted from two types of L. maxima samples (Limnospira maxima strain SISCA accession GenBank: OR195505.1) were evaluated using three commercially available DNA extraction kits and two types of input biological material. The results showed that Pbact-P kit had the highest quantity and quality of DNA, while CTAB-P allowed for a higher quantity and quality of RNA, making them optimal protocols for nucleic acid extraction to improve PCR, rt-PCR, and genome sequencing of L. maxima compared with other extraction methods.
format Online
Article
Text
id pubmed-10366785
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-103667852023-07-26 A New and Profitable Protocol to DNA Extraction in Limnospira maxima Pineda-Rodriguez, Yirlis Yadeth Pompelli, Marcelo F. Jarma-Orozco, Alfredo Rodríguez, Novisel Veitía Rodriguez-Paez, Luis Alfonso Methods Protoc Protocol Limnospira maxima is a remarkable organism showing great potential as a versatile and sustainable food source, offering a powerful solution to address the pressing issues of malnutrition and undernourishment worldwide. L. maxima contains high amounts of proteins, vitamins, minerals, and essential fatty acids. It can be grown in both bioreactors and open systems; however, before considering industrial production, optimization studies of the cultivation must be conducted to obtain knowledge about the ideal environmental conditions. Additionally, for the molecular typing of L. maxima strains and their industrial scaling, high-quality and large quantity DNA extraction is required. Notwithstanding, DNA extraction from L. maxima can be challenging due to the low amount of DNA in cells and the presence of difficult-to-remove substances such as polysaccharides and polyphenols. In this study, the quality and quantity of DNA extracted from two types of L. maxima samples (Limnospira maxima strain SISCA accession GenBank: OR195505.1) were evaluated using three commercially available DNA extraction kits and two types of input biological material. The results showed that Pbact-P kit had the highest quantity and quality of DNA, while CTAB-P allowed for a higher quantity and quality of RNA, making them optimal protocols for nucleic acid extraction to improve PCR, rt-PCR, and genome sequencing of L. maxima compared with other extraction methods. MDPI 2023-07-01 /pmc/articles/PMC10366785/ /pubmed/37489429 http://dx.doi.org/10.3390/mps6040062 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Protocol
Pineda-Rodriguez, Yirlis Yadeth
Pompelli, Marcelo F.
Jarma-Orozco, Alfredo
Rodríguez, Novisel Veitía
Rodriguez-Paez, Luis Alfonso
A New and Profitable Protocol to DNA Extraction in Limnospira maxima
title A New and Profitable Protocol to DNA Extraction in Limnospira maxima
title_full A New and Profitable Protocol to DNA Extraction in Limnospira maxima
title_fullStr A New and Profitable Protocol to DNA Extraction in Limnospira maxima
title_full_unstemmed A New and Profitable Protocol to DNA Extraction in Limnospira maxima
title_short A New and Profitable Protocol to DNA Extraction in Limnospira maxima
title_sort new and profitable protocol to dna extraction in limnospira maxima
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366785/
https://www.ncbi.nlm.nih.gov/pubmed/37489429
http://dx.doi.org/10.3390/mps6040062
work_keys_str_mv AT pinedarodriguezyirlisyadeth anewandprofitableprotocoltodnaextractioninlimnospiramaxima
AT pompellimarcelof anewandprofitableprotocoltodnaextractioninlimnospiramaxima
AT jarmaorozcoalfredo anewandprofitableprotocoltodnaextractioninlimnospiramaxima
AT rodrigueznoviselveitia anewandprofitableprotocoltodnaextractioninlimnospiramaxima
AT rodriguezpaezluisalfonso anewandprofitableprotocoltodnaextractioninlimnospiramaxima
AT pinedarodriguezyirlisyadeth newandprofitableprotocoltodnaextractioninlimnospiramaxima
AT pompellimarcelof newandprofitableprotocoltodnaextractioninlimnospiramaxima
AT jarmaorozcoalfredo newandprofitableprotocoltodnaextractioninlimnospiramaxima
AT rodrigueznoviselveitia newandprofitableprotocoltodnaextractioninlimnospiramaxima
AT rodriguezpaezluisalfonso newandprofitableprotocoltodnaextractioninlimnospiramaxima