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An automatic analysis framework for FDOPA PET neuroimaging
In this study we evaluate the performance of a fully automated analytical framework for FDOPA PET neuroimaging data, and its sensitivity to demographic and experimental variables and processing parameters. An instance of XNAT imaging platform was used to store the King’s College London institutional...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369152/ https://www.ncbi.nlm.nih.gov/pubmed/37026455 http://dx.doi.org/10.1177/0271678X231168687 |
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author | Nordio, Giovanna Easmin, Rubaida Giacomel, Alessio Dipasquale, Ottavia Martins, Daniel Williams, Steven Turkheimer, Federico Howes, Oliver Veronese, Mattia Jauhar, Sameer Rogdaki, Maria McCutcheon, Robert Kaar, Stephen Vano, Luke Rutigliano, Grazia Angelescu, Ilinca Borgan, Faith D’Ambrosio, Enrico Dahoun, Tarik Kim, Euitae Kim, Seoyoung Bloomfield, Micheal Egerton, Alice Demjaha, Arsime Bonoldi, Ilaria Nosarti, Chiara Maccabe, James McGuire, Philip Matthews, Julian Talbot, Peter S |
author_facet | Nordio, Giovanna Easmin, Rubaida Giacomel, Alessio Dipasquale, Ottavia Martins, Daniel Williams, Steven Turkheimer, Federico Howes, Oliver Veronese, Mattia Jauhar, Sameer Rogdaki, Maria McCutcheon, Robert Kaar, Stephen Vano, Luke Rutigliano, Grazia Angelescu, Ilinca Borgan, Faith D’Ambrosio, Enrico Dahoun, Tarik Kim, Euitae Kim, Seoyoung Bloomfield, Micheal Egerton, Alice Demjaha, Arsime Bonoldi, Ilaria Nosarti, Chiara Maccabe, James McGuire, Philip Matthews, Julian Talbot, Peter S |
author_sort | Nordio, Giovanna |
collection | PubMed |
description | In this study we evaluate the performance of a fully automated analytical framework for FDOPA PET neuroimaging data, and its sensitivity to demographic and experimental variables and processing parameters. An instance of XNAT imaging platform was used to store the King’s College London institutional brain FDOPA PET imaging archive, alongside individual demographics and clinical information. By re-engineering the historical Matlab-based scripts for FDOPA PET analysis, a fully automated analysis pipeline for imaging processing and data quantification was implemented in Python and integrated in XNAT. The final data repository includes 892 FDOPA PET scans organized from 23 different studies. We found good reproducibility of the data analysis by the automated pipeline (in the striatum for the Ki(cer): for the controls ICC = 0.71, for the psychotic patients ICC = 0.88). From the demographic and experimental variables assessed, gender was found to most influence striatal dopamine synthesis capacity (F = 10.7, p < 0.001), with women showing greater dopamine synthesis capacity than men. Our automated analysis pipeline represents a valid resourse for standardised and robust quantification of dopamine synthesis capacity using FDOPA PET data. Combining information from different neuroimaging studies has allowed us to test it comprehensively and to validate its replicability and reproducibility performances on a large sample size. |
format | Online Article Text |
id | pubmed-10369152 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-103691522023-07-27 An automatic analysis framework for FDOPA PET neuroimaging Nordio, Giovanna Easmin, Rubaida Giacomel, Alessio Dipasquale, Ottavia Martins, Daniel Williams, Steven Turkheimer, Federico Howes, Oliver Veronese, Mattia Jauhar, Sameer Rogdaki, Maria McCutcheon, Robert Kaar, Stephen Vano, Luke Rutigliano, Grazia Angelescu, Ilinca Borgan, Faith D’Ambrosio, Enrico Dahoun, Tarik Kim, Euitae Kim, Seoyoung Bloomfield, Micheal Egerton, Alice Demjaha, Arsime Bonoldi, Ilaria Nosarti, Chiara Maccabe, James McGuire, Philip Matthews, Julian Talbot, Peter S J Cereb Blood Flow Metab Original Article In this study we evaluate the performance of a fully automated analytical framework for FDOPA PET neuroimaging data, and its sensitivity to demographic and experimental variables and processing parameters. An instance of XNAT imaging platform was used to store the King’s College London institutional brain FDOPA PET imaging archive, alongside individual demographics and clinical information. By re-engineering the historical Matlab-based scripts for FDOPA PET analysis, a fully automated analysis pipeline for imaging processing and data quantification was implemented in Python and integrated in XNAT. The final data repository includes 892 FDOPA PET scans organized from 23 different studies. We found good reproducibility of the data analysis by the automated pipeline (in the striatum for the Ki(cer): for the controls ICC = 0.71, for the psychotic patients ICC = 0.88). From the demographic and experimental variables assessed, gender was found to most influence striatal dopamine synthesis capacity (F = 10.7, p < 0.001), with women showing greater dopamine synthesis capacity than men. Our automated analysis pipeline represents a valid resourse for standardised and robust quantification of dopamine synthesis capacity using FDOPA PET data. Combining information from different neuroimaging studies has allowed us to test it comprehensively and to validate its replicability and reproducibility performances on a large sample size. SAGE Publications 2023-04-07 2023-08 /pmc/articles/PMC10369152/ /pubmed/37026455 http://dx.doi.org/10.1177/0271678X231168687 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Article Nordio, Giovanna Easmin, Rubaida Giacomel, Alessio Dipasquale, Ottavia Martins, Daniel Williams, Steven Turkheimer, Federico Howes, Oliver Veronese, Mattia Jauhar, Sameer Rogdaki, Maria McCutcheon, Robert Kaar, Stephen Vano, Luke Rutigliano, Grazia Angelescu, Ilinca Borgan, Faith D’Ambrosio, Enrico Dahoun, Tarik Kim, Euitae Kim, Seoyoung Bloomfield, Micheal Egerton, Alice Demjaha, Arsime Bonoldi, Ilaria Nosarti, Chiara Maccabe, James McGuire, Philip Matthews, Julian Talbot, Peter S An automatic analysis framework for FDOPA PET neuroimaging |
title | An automatic analysis framework for FDOPA PET neuroimaging |
title_full | An automatic analysis framework for FDOPA PET neuroimaging |
title_fullStr | An automatic analysis framework for FDOPA PET neuroimaging |
title_full_unstemmed | An automatic analysis framework for FDOPA PET neuroimaging |
title_short | An automatic analysis framework for FDOPA PET neuroimaging |
title_sort | automatic analysis framework for fdopa pet neuroimaging |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369152/ https://www.ncbi.nlm.nih.gov/pubmed/37026455 http://dx.doi.org/10.1177/0271678X231168687 |
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