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Unlocking Genetic Profiles with a Programmable DNA‐Powered Decoding Circuit

Human genetic architecture provides remarkable insights into disease risk prediction and personalized medication. Advances in genomics have boosted the fine‐mapping of disease‐associated genetic variants across human genome. In healthcare practice, interpreting intricate genetic profiles into action...

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Autores principales: Liu, Junlan, Zhang, Chao, Song, Jinxing, Zhang, Qing, Zhang, Rongjun, Zhang, Mingzhi, Han, Da, Tan, Weihong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369254/
https://www.ncbi.nlm.nih.gov/pubmed/37116171
http://dx.doi.org/10.1002/advs.202206343
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author Liu, Junlan
Zhang, Chao
Song, Jinxing
Zhang, Qing
Zhang, Rongjun
Zhang, Mingzhi
Han, Da
Tan, Weihong
author_facet Liu, Junlan
Zhang, Chao
Song, Jinxing
Zhang, Qing
Zhang, Rongjun
Zhang, Mingzhi
Han, Da
Tan, Weihong
author_sort Liu, Junlan
collection PubMed
description Human genetic architecture provides remarkable insights into disease risk prediction and personalized medication. Advances in genomics have boosted the fine‐mapping of disease‐associated genetic variants across human genome. In healthcare practice, interpreting intricate genetic profiles into actionable medical decisions can improve health outcomes but remains challenging. Here an intelligent genetic decoder is engineered with programmable DNA computation to automate clinical analyses and interpretations. The DNA‐based decoder recognizes multiplex genetic information by one‐pot ligase‐dependent reactions and interprets implicit genetic profiles into explicit decision reports. It is shown that the DNA decoder implements intended computation on genetic profiles and outputs a corresponding answer within hours. Effectiveness in 30 human genomic samples is validated and it is shown that it achieves desirable performance on the interpretation of CYP2C19 genetic profiles into drug responses, with accuracy equivalent to that of Sanger sequencing. Circuit modules of the DNA decoder can also be readily reprogrammed to interpret another pharmacogenetics genes, provide drug dosing recommendations, and implement reliable molecular calculation of polygenic risk score (PRS) and PRS‐informed cancer risk assessment. The DNA‐powered intelligent decoder provides a general solution to the translation of complex genetic profiles into actionable healthcare decisions and will facilitate personalized healthcare in primary care.
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spelling pubmed-103692542023-07-27 Unlocking Genetic Profiles with a Programmable DNA‐Powered Decoding Circuit Liu, Junlan Zhang, Chao Song, Jinxing Zhang, Qing Zhang, Rongjun Zhang, Mingzhi Han, Da Tan, Weihong Adv Sci (Weinh) Research Articles Human genetic architecture provides remarkable insights into disease risk prediction and personalized medication. Advances in genomics have boosted the fine‐mapping of disease‐associated genetic variants across human genome. In healthcare practice, interpreting intricate genetic profiles into actionable medical decisions can improve health outcomes but remains challenging. Here an intelligent genetic decoder is engineered with programmable DNA computation to automate clinical analyses and interpretations. The DNA‐based decoder recognizes multiplex genetic information by one‐pot ligase‐dependent reactions and interprets implicit genetic profiles into explicit decision reports. It is shown that the DNA decoder implements intended computation on genetic profiles and outputs a corresponding answer within hours. Effectiveness in 30 human genomic samples is validated and it is shown that it achieves desirable performance on the interpretation of CYP2C19 genetic profiles into drug responses, with accuracy equivalent to that of Sanger sequencing. Circuit modules of the DNA decoder can also be readily reprogrammed to interpret another pharmacogenetics genes, provide drug dosing recommendations, and implement reliable molecular calculation of polygenic risk score (PRS) and PRS‐informed cancer risk assessment. The DNA‐powered intelligent decoder provides a general solution to the translation of complex genetic profiles into actionable healthcare decisions and will facilitate personalized healthcare in primary care. John Wiley and Sons Inc. 2023-04-28 /pmc/articles/PMC10369254/ /pubmed/37116171 http://dx.doi.org/10.1002/advs.202206343 Text en © 2023 The Authors. Advanced Science published by Wiley‐VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Liu, Junlan
Zhang, Chao
Song, Jinxing
Zhang, Qing
Zhang, Rongjun
Zhang, Mingzhi
Han, Da
Tan, Weihong
Unlocking Genetic Profiles with a Programmable DNA‐Powered Decoding Circuit
title Unlocking Genetic Profiles with a Programmable DNA‐Powered Decoding Circuit
title_full Unlocking Genetic Profiles with a Programmable DNA‐Powered Decoding Circuit
title_fullStr Unlocking Genetic Profiles with a Programmable DNA‐Powered Decoding Circuit
title_full_unstemmed Unlocking Genetic Profiles with a Programmable DNA‐Powered Decoding Circuit
title_short Unlocking Genetic Profiles with a Programmable DNA‐Powered Decoding Circuit
title_sort unlocking genetic profiles with a programmable dna‐powered decoding circuit
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369254/
https://www.ncbi.nlm.nih.gov/pubmed/37116171
http://dx.doi.org/10.1002/advs.202206343
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