Cargando…

Spatial Reconstruction of Oligo and Single Cells by De Novo Coalescent Embedding of Transcriptomic Networks

Single cell RNA‐seq (scRNA‐seq) profiles conceal temporal and spatial tissue developmental information. De novo reconstruction of single cell temporal trajectory has been fairly addressed, but reverse engineering single cell 3D spatial tissue organization is hitherto landmark based, and de novo spat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhao, Yuxuan, Zhang, Shiqiang, Xu, Jian, Yu, Yangyang, Peng, Guangdun, Cannistraci, Carlo Vittorio, Han, Jing‐Dong J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2023
Materias:	Research Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369275/ https://www.ncbi.nlm.nih.gov/pubmed/37323105 http://dx.doi.org/10.1002/advs.202206307

Ejemplares similares

Machine learning meets complex networks via coalescent embedding in the hyperbolic space
por: Muscoloni, Alessandro, et al.
Publicado: (2017)

Optimisation of the coalescent hyperbolic embedding of complex networks
por: Kovács, Bianka, et al.
Publicado: (2021)

Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding
por: Cannistraci, Carlo Vittorio, et al.
Publicado: (2013)

Integration of Computational Analysis and Spatial Transcriptomics in Single-cell Studies
por: Wang, Ran, et al.
Publicado: (2023)

Spatial transcriptomics: new dimension of understanding biological complexity
por: Li, Zhuxia, et al.
Publicado: (2022)

De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data with DeepLinc
por: Li, Runze, et al.
Publicado: (2022)

Median Modified Wiener Filter for nonlinear adaptive spatial denoising of protein NMR multidimensional spectra
por: Cannistraci, Carlo Vittorio, et al.
Publicado: (2015)

Modelling Self-Organization in Complex Networks Via a Brain-Inspired Network Automata Theory Improves Link Reliability in Protein Interactomes
por: Cannistraci, Carlo Vittorio
Publicado: (2018)

CytoTalk: De novo construction of signal transduction networks using single-cell transcriptomic data
por: Hu, Yuxuan, et al.
Publicado: (2021)

SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent
por: De Maio, Nicola, et al.
Publicado: (2016)

Geometrical congruence, greedy navigability and myopic transfer in complex networks and brain connectomes
por: Cannistraci, Carlo Vittorio, et al.
Publicado: (2022)

“Stealing fire or stacking knowledge” by machine intelligence to model link prediction in complex networks
por: Muscoloni, Alessandro, et al.
Publicado: (2022)

Fractional coalescent
por: Mashayekhi, Somayeh, et al.
Publicado: (2019)

Spatial regulation of coalesced protein assemblies: Lessons from yeast to diseases
por: Saarikangas, Juha, et al.
Publicado: (2017)

Coalescent: an open-science framework for importance sampling in coalescent theory
por: Tewari, Susanta, et al.
Publicado: (2015)

Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum
por: Wang, Yihan, et al.
Publicado: (2018)

Bering: joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings
por: Jin, Kang, et al.
Publicado: (2023)

Coalescent Theory of Migration Network Motifs
por: Alcala, Nicolas, et al.
Publicado: (2019)

Chromatin network retards nucleoli coalescence
por: Qi, Yifeng, et al.
Publicado: (2021)

Coalescent: an open-source and scalable framework for exact calculations in coalescent theory
por: Tewari, Susanta, et al.
Publicado: (2012)

Single-Cell Transcriptome Analysis in Melanoma Using Network Embedding
por: Wang, Liming, et al.
Publicado: (2021)

Benchmarking single-cell hashtag oligo demultiplexing methods
por: Howitt, George, et al.
Publicado: (2023)

Fast "coalescent" simulation
por: Marjoram, Paul, et al.
Publicado: (2006)

Hydrodynamics of binary coalescence
por: Rasio, F A
Publicado: (1994)

Coalescence, interferometry and flow
por: Bearden, I G, et al.
Publicado: (1999)

Discrete coalescent trees
por: Collienne, Lena, et al.
Publicado: (2021)

Can Nanowires Coalesce?
por: Dubrovskii, Vladimir G.
Publicado: (2023)

Physics of Relativistic Objects in Compact Binaries: From Birth to Coalescence
por: Colpi, Monica, et al.
Publicado: (2009)

De novo transcriptome reconstruction and annotation of the Egyptian rousette bat
por: Lee, Albert K., et al.
Publicado: (2015)

The Effect of Single Recombination Events on Coalescent Tree Height and Shape
por: Ferretti, Luca, et al.
Publicado: (2013)

CellCoal: Coalescent Simulation of Single-Cell Sequencing Samples
por: Posada, David
Publicado: (2020)

SPASCER: spatial transcriptomics annotation at single-cell resolution
por: Fan, Zhiwei, et al.
Publicado: (2022)

Characterization of Reticulate Networks Based on the Coalescent with Recombination
por: Arenas, Miguel, et al.
Publicado: (2008)

Reconstruction of karyotypic evolution in Saccharum spontaneum species by comparative oligo-FISH mapping
por: Meng, Zhuang, et al.
Publicado: (2022)

From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
por: Cannistraci, Carlo Vittorio, et al.
Publicado: (2013)

Erratum: From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
por: Cannistraci, Carlo Vittorio, et al.
Publicado: (2015)

Sampling and ranking spatial transcriptomics data embeddings to identify tissue architecture
por: Lin, Yu, et al.
Publicado: (2022)

Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST
por: Liu, Wei, et al.
Publicado: (2023)

The alginate polymer OligoG alters susceptibility of biofilm-embedded non-typeable Haemophilus influenzae to ampicillin and ciprofloxacin
por: Marienborg, Kaja, et al.
Publicado: (2023)

Coalescing traditions—Coalescing people: Community formation in Pannonia after the decline of the Roman Empire
por: Knipper, Corina, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_7cvdos22rpgjmoovbgdih94at8