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Complete chloroplast genome data of Ranunculus membranaceus (Ranunculaceae), an important medicinal plant species
The perennial alpine herb Ranunculus membranaceus (Ranunculaceae) has significant medicinal value. The complete chloroplast genome of R. membranaceus was sequenced by high-throughput Illumina sequencing Platform Illumina NovaSeq 6000. The circular genome is 156,028 bp in size, including two inverted...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369386/ https://www.ncbi.nlm.nih.gov/pubmed/37501731 http://dx.doi.org/10.1016/j.dib.2023.109416 |
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author | Ren, Yanmei Wang, Mengyan Wang, Zuoyi Wu, Lin Wan, Ji-Zhong Zhou, Huakun Ma, Zhen Zhang, Chunhui |
author_facet | Ren, Yanmei Wang, Mengyan Wang, Zuoyi Wu, Lin Wan, Ji-Zhong Zhou, Huakun Ma, Zhen Zhang, Chunhui |
author_sort | Ren, Yanmei |
collection | PubMed |
description | The perennial alpine herb Ranunculus membranaceus (Ranunculaceae) has significant medicinal value. The complete chloroplast genome of R. membranaceus was sequenced by high-throughput Illumina sequencing Platform Illumina NovaSeq 6000. The circular genome is 156,028 bp in size, including two inverted repeats (IRs) of 25,361 bp, a large single-copy (LSC) region of 85,491 bp, and a small single-copy (SSC) region of 19,815 bp. A total of 128 genes were annotated, namely 84 protein-coding genes (PCGs), 36 tRNA genes, and eight rRNA genes. Two phylogenetic trees of 18 species of the tribe Ranunculeae species were constructed with Meconopsis punicea as the outgroup based on the whole chloroplast genomes and the concatenated sequence of PCGs, respectively. Phylogeny showed that R. membranaceus was closely related to R. yunnanensis. These data enrich knowledge of Ranunculaceae genetics and will contribute to further studies of R. membranaceus in molecular breeding, genetic transformation, species identification, genetic engineering and phylogenetic research. |
format | Online Article Text |
id | pubmed-10369386 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-103693862023-07-27 Complete chloroplast genome data of Ranunculus membranaceus (Ranunculaceae), an important medicinal plant species Ren, Yanmei Wang, Mengyan Wang, Zuoyi Wu, Lin Wan, Ji-Zhong Zhou, Huakun Ma, Zhen Zhang, Chunhui Data Brief Data Article The perennial alpine herb Ranunculus membranaceus (Ranunculaceae) has significant medicinal value. The complete chloroplast genome of R. membranaceus was sequenced by high-throughput Illumina sequencing Platform Illumina NovaSeq 6000. The circular genome is 156,028 bp in size, including two inverted repeats (IRs) of 25,361 bp, a large single-copy (LSC) region of 85,491 bp, and a small single-copy (SSC) region of 19,815 bp. A total of 128 genes were annotated, namely 84 protein-coding genes (PCGs), 36 tRNA genes, and eight rRNA genes. Two phylogenetic trees of 18 species of the tribe Ranunculeae species were constructed with Meconopsis punicea as the outgroup based on the whole chloroplast genomes and the concatenated sequence of PCGs, respectively. Phylogeny showed that R. membranaceus was closely related to R. yunnanensis. These data enrich knowledge of Ranunculaceae genetics and will contribute to further studies of R. membranaceus in molecular breeding, genetic transformation, species identification, genetic engineering and phylogenetic research. Elsevier 2023-07-16 /pmc/articles/PMC10369386/ /pubmed/37501731 http://dx.doi.org/10.1016/j.dib.2023.109416 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Ren, Yanmei Wang, Mengyan Wang, Zuoyi Wu, Lin Wan, Ji-Zhong Zhou, Huakun Ma, Zhen Zhang, Chunhui Complete chloroplast genome data of Ranunculus membranaceus (Ranunculaceae), an important medicinal plant species |
title | Complete chloroplast genome data of Ranunculus membranaceus (Ranunculaceae), an important medicinal plant species |
title_full | Complete chloroplast genome data of Ranunculus membranaceus (Ranunculaceae), an important medicinal plant species |
title_fullStr | Complete chloroplast genome data of Ranunculus membranaceus (Ranunculaceae), an important medicinal plant species |
title_full_unstemmed | Complete chloroplast genome data of Ranunculus membranaceus (Ranunculaceae), an important medicinal plant species |
title_short | Complete chloroplast genome data of Ranunculus membranaceus (Ranunculaceae), an important medicinal plant species |
title_sort | complete chloroplast genome data of ranunculus membranaceus (ranunculaceae), an important medicinal plant species |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369386/ https://www.ncbi.nlm.nih.gov/pubmed/37501731 http://dx.doi.org/10.1016/j.dib.2023.109416 |
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