Cargando…

Draft genome sequence dataset of Latilactobacillus curvatus PN39MY isolated from fermented vegetables

Here we report the draft genome sequence of the Latilactobacillus curvatus PN39MY strain. The strain was isolated from Lithuanian traditionally (homemade) fermented cucumber. The genome consisted of 83 contigs with a total size of 1,899,018 bp, an N50 of 40562 and a GC% of 42.1. After sequence trimm...

Descripción completa

Detalles Bibliográficos
Autores principales: Daliri, Eric Banan-Mwine, Balnionytė, Toma, Lastauskienė, Eglė, Burokas, Aurelijus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369389/
https://www.ncbi.nlm.nih.gov/pubmed/37501729
http://dx.doi.org/10.1016/j.dib.2023.109436
_version_ 1785077749662089216
author Daliri, Eric Banan-Mwine
Balnionytė, Toma
Lastauskienė, Eglė
Burokas, Aurelijus
author_facet Daliri, Eric Banan-Mwine
Balnionytė, Toma
Lastauskienė, Eglė
Burokas, Aurelijus
author_sort Daliri, Eric Banan-Mwine
collection PubMed
description Here we report the draft genome sequence of the Latilactobacillus curvatus PN39MY strain. The strain was isolated from Lithuanian traditionally (homemade) fermented cucumber. The genome consisted of 83 contigs with a total size of 1,899,018 bp, an N50 of 40562 and a GC% of 42.1. After sequence trimming, 83 contigs were annotated and 1910 genes were coding sequences. The average nucleotide identity (ANI) between PN39MY and Latilactobacillus curvatus_ZJUNIT8 was 99.45% identifying the strain as Latilactobacillus curvatus. No genes related to antimicrobial resistance or virulence factors were found. The data presented here can be used in comparative genomics to identify antimicrobial resistant genes, plasmids and/or virulence factors that may be present in related Latilactobacillus species. The draft genome sequence data was deposited at NCBI under Bioproject with the accession number PRJNA941180.
format Online
Article
Text
id pubmed-10369389
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-103693892023-07-27 Draft genome sequence dataset of Latilactobacillus curvatus PN39MY isolated from fermented vegetables Daliri, Eric Banan-Mwine Balnionytė, Toma Lastauskienė, Eglė Burokas, Aurelijus Data Brief Data Article Here we report the draft genome sequence of the Latilactobacillus curvatus PN39MY strain. The strain was isolated from Lithuanian traditionally (homemade) fermented cucumber. The genome consisted of 83 contigs with a total size of 1,899,018 bp, an N50 of 40562 and a GC% of 42.1. After sequence trimming, 83 contigs were annotated and 1910 genes were coding sequences. The average nucleotide identity (ANI) between PN39MY and Latilactobacillus curvatus_ZJUNIT8 was 99.45% identifying the strain as Latilactobacillus curvatus. No genes related to antimicrobial resistance or virulence factors were found. The data presented here can be used in comparative genomics to identify antimicrobial resistant genes, plasmids and/or virulence factors that may be present in related Latilactobacillus species. The draft genome sequence data was deposited at NCBI under Bioproject with the accession number PRJNA941180. Elsevier 2023-07-20 /pmc/articles/PMC10369389/ /pubmed/37501729 http://dx.doi.org/10.1016/j.dib.2023.109436 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Daliri, Eric Banan-Mwine
Balnionytė, Toma
Lastauskienė, Eglė
Burokas, Aurelijus
Draft genome sequence dataset of Latilactobacillus curvatus PN39MY isolated from fermented vegetables
title Draft genome sequence dataset of Latilactobacillus curvatus PN39MY isolated from fermented vegetables
title_full Draft genome sequence dataset of Latilactobacillus curvatus PN39MY isolated from fermented vegetables
title_fullStr Draft genome sequence dataset of Latilactobacillus curvatus PN39MY isolated from fermented vegetables
title_full_unstemmed Draft genome sequence dataset of Latilactobacillus curvatus PN39MY isolated from fermented vegetables
title_short Draft genome sequence dataset of Latilactobacillus curvatus PN39MY isolated from fermented vegetables
title_sort draft genome sequence dataset of latilactobacillus curvatus pn39my isolated from fermented vegetables
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369389/
https://www.ncbi.nlm.nih.gov/pubmed/37501729
http://dx.doi.org/10.1016/j.dib.2023.109436
work_keys_str_mv AT daliriericbananmwine draftgenomesequencedatasetoflatilactobacilluscurvatuspn39myisolatedfromfermentedvegetables
AT balnionytetoma draftgenomesequencedatasetoflatilactobacilluscurvatuspn39myisolatedfromfermentedvegetables
AT lastauskieneegle draftgenomesequencedatasetoflatilactobacilluscurvatuspn39myisolatedfromfermentedvegetables
AT burokasaurelijus draftgenomesequencedatasetoflatilactobacilluscurvatuspn39myisolatedfromfermentedvegetables