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Multimerizations, Aggregation, and Transfer Reactions of Small Numbers of Molecules
[Image: see text] Chemical equilibria of multimerizations in systems with small numbers of particles exhibit a behavior seemingly at odds with that observed macroscopically. In this paper, we apply the recently proposed expression of equilibrium constant for binding, which includes cross-correlation...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369493/ https://www.ncbi.nlm.nih.gov/pubmed/37430452 http://dx.doi.org/10.1021/acs.jcim.3c00774 |
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author | Zangi, Ronen |
author_facet | Zangi, Ronen |
author_sort | Zangi, Ronen |
collection | PubMed |
description | [Image: see text] Chemical equilibria of multimerizations in systems with small numbers of particles exhibit a behavior seemingly at odds with that observed macroscopically. In this paper, we apply the recently proposed expression of equilibrium constant for binding, which includes cross-correlations in reactants’ concentrations, to write an equilibrium constant for the formation of clusters larger than two (e.g., trimer, tetramer, and pentamer) as series of two-body reactions. Results obtained by molecular dynamics simulations demonstrate that the value of this expression is constant for all concentrations and system sizes, as well as at an onset of a phase transition to an aggregated state, where densities in the system change discontinuously. In contrast, the value of the commonly utilized expression of equilibrium constant, which ignores correlations, is not constant and its variations can reach few orders of magnitude. Considering different paths for the same multimer formation, with elementary reactions of any order, yields different expressions for the equilibrium constant, yet, with exactly the same value. This is also true for routes with essentially zero probability to occur. Existence of different expressions for the same equilibrium constant imposes equalities between averages of correlated, along with uncorrelated, concentrations of participating species. Moreover, a relation between an average particle number and relative fluctuations derived for two-body reactions is found to be obeyed here as well despite couplings to additional equilibrium reactions in the system. Analyses of transfer reactions, where association and dissociation events take place on both sides of the chemical equation, further indicate the necessity to include cross-correlations in the expression of the equilibrium constant. However, in this case, the magnitudes of discrepancies of the uncorrelated expression are smaller, likely because of partial cancellation of correlations, which exist on both the reactant and product sides. |
format | Online Article Text |
id | pubmed-10369493 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-103694932023-07-27 Multimerizations, Aggregation, and Transfer Reactions of Small Numbers of Molecules Zangi, Ronen J Chem Inf Model [Image: see text] Chemical equilibria of multimerizations in systems with small numbers of particles exhibit a behavior seemingly at odds with that observed macroscopically. In this paper, we apply the recently proposed expression of equilibrium constant for binding, which includes cross-correlations in reactants’ concentrations, to write an equilibrium constant for the formation of clusters larger than two (e.g., trimer, tetramer, and pentamer) as series of two-body reactions. Results obtained by molecular dynamics simulations demonstrate that the value of this expression is constant for all concentrations and system sizes, as well as at an onset of a phase transition to an aggregated state, where densities in the system change discontinuously. In contrast, the value of the commonly utilized expression of equilibrium constant, which ignores correlations, is not constant and its variations can reach few orders of magnitude. Considering different paths for the same multimer formation, with elementary reactions of any order, yields different expressions for the equilibrium constant, yet, with exactly the same value. This is also true for routes with essentially zero probability to occur. Existence of different expressions for the same equilibrium constant imposes equalities between averages of correlated, along with uncorrelated, concentrations of participating species. Moreover, a relation between an average particle number and relative fluctuations derived for two-body reactions is found to be obeyed here as well despite couplings to additional equilibrium reactions in the system. Analyses of transfer reactions, where association and dissociation events take place on both sides of the chemical equation, further indicate the necessity to include cross-correlations in the expression of the equilibrium constant. However, in this case, the magnitudes of discrepancies of the uncorrelated expression are smaller, likely because of partial cancellation of correlations, which exist on both the reactant and product sides. American Chemical Society 2023-07-11 /pmc/articles/PMC10369493/ /pubmed/37430452 http://dx.doi.org/10.1021/acs.jcim.3c00774 Text en © 2023 The Author. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Zangi, Ronen Multimerizations, Aggregation, and Transfer Reactions of Small Numbers of Molecules |
title | Multimerizations,
Aggregation, and Transfer Reactions
of Small Numbers of Molecules |
title_full | Multimerizations,
Aggregation, and Transfer Reactions
of Small Numbers of Molecules |
title_fullStr | Multimerizations,
Aggregation, and Transfer Reactions
of Small Numbers of Molecules |
title_full_unstemmed | Multimerizations,
Aggregation, and Transfer Reactions
of Small Numbers of Molecules |
title_short | Multimerizations,
Aggregation, and Transfer Reactions
of Small Numbers of Molecules |
title_sort | multimerizations,
aggregation, and transfer reactions
of small numbers of molecules |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369493/ https://www.ncbi.nlm.nih.gov/pubmed/37430452 http://dx.doi.org/10.1021/acs.jcim.3c00774 |
work_keys_str_mv | AT zangironen multimerizationsaggregationandtransferreactionsofsmallnumbersofmolecules |