Cargando…
OGRE: calculate, visualize, and analyze overlap between genomic input regions and public annotations
BACKGROUND: Modern genome sequencing leads to an ever-growing collection of genomic annotations. Combining these elements with a set of input regions (e.g. genes) would yield new insights in genomic associations, such as those involved in gene regulation. The required data are scattered across diffe...
Autores principales: | Berres, Sven, Gromoll, Jörg, Wöste, Marius, Sandmann, Sarah, Laurentino, Sandra |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10369718/ https://www.ncbi.nlm.nih.gov/pubmed/37496002 http://dx.doi.org/10.1186/s12859-023-05422-w |
Ejemplares similares
-
wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
por: Wöste, Marius, et al.
Publicado: (2020) -
OGRE: Overlap Graph-based metagenomic Read clustEring
por: Balvert, Marleen, et al.
Publicado: (2020) -
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
por: Porollo, Aleksey, et al.
Publicado: (2007) -
PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
por: Salmon-Divon, Mali, et al.
Publicado: (2010) -
DAVID: Database for Annotation, Visualization, and Integrated Discovery
por: Dennis, Glynn, et al.
Publicado: (2003)