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Regression and Alignment for Functional Data and Network Topology

In the brain, functional connections form a network whose topological organization can be described by graph-theoretic network diagnostics. These include characterizations of the community structure, such as modularity and participation coefficient, which have been shown to change over the course of...

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Autores principales: Tu, Danni, Wrobel, Julia, Satterthwaite, Theodore D., Goldsmith, Jeff, Gur, Ruben C., Gur, Raquel E., Gertheiss, Jan, Bassett, Dani S., Shinohara, Russell T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10370026/
https://www.ncbi.nlm.nih.gov/pubmed/37503017
http://dx.doi.org/10.1101/2023.07.13.548836
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author Tu, Danni
Wrobel, Julia
Satterthwaite, Theodore D.
Goldsmith, Jeff
Gur, Ruben C.
Gur, Raquel E.
Gertheiss, Jan
Bassett, Dani S.
Shinohara, Russell T.
author_facet Tu, Danni
Wrobel, Julia
Satterthwaite, Theodore D.
Goldsmith, Jeff
Gur, Ruben C.
Gur, Raquel E.
Gertheiss, Jan
Bassett, Dani S.
Shinohara, Russell T.
author_sort Tu, Danni
collection PubMed
description In the brain, functional connections form a network whose topological organization can be described by graph-theoretic network diagnostics. These include characterizations of the community structure, such as modularity and participation coefficient, which have been shown to change over the course of childhood and adolescence. To investigate if such changes in the functional network are associated with changes in cognitive performance during development, network studies often rely on an arbitrary choice of pre-processing parameters, in particular the proportional threshold of network edges. Because the choice of parameter can impact the value of the network diagnostic, and therefore downstream conclusions, we propose to circumvent that choice by conceptualizing the network diagnostic as a function of the parameter. As opposed to a single value, a network diagnostic curve describes the connectome topology at multiple scales — from the sparsest group of the strongest edges to the entire edge set. To relate these curves to executive function and other covariates, we use scalar-on-function regression, which is more flexible than previous functional data-based models used in network neuroscience. We then consider how systematic differences between networks can manifest in misalignment of diagnostic curves, and consequently propose a supervised curve alignment method that incorporates auxiliary information from other variables. Our algorithm performs both functional regression and alignment via an iterative, penalized, and nonlinear likelihood optimization. The illustrated method has the potential to improve the interpretability and generalizability of neuroscience studies where the goal is to study heterogeneity among a mixture of function- and scalar-valued measures.
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spelling pubmed-103700262023-07-27 Regression and Alignment for Functional Data and Network Topology Tu, Danni Wrobel, Julia Satterthwaite, Theodore D. Goldsmith, Jeff Gur, Ruben C. Gur, Raquel E. Gertheiss, Jan Bassett, Dani S. Shinohara, Russell T. bioRxiv Article In the brain, functional connections form a network whose topological organization can be described by graph-theoretic network diagnostics. These include characterizations of the community structure, such as modularity and participation coefficient, which have been shown to change over the course of childhood and adolescence. To investigate if such changes in the functional network are associated with changes in cognitive performance during development, network studies often rely on an arbitrary choice of pre-processing parameters, in particular the proportional threshold of network edges. Because the choice of parameter can impact the value of the network diagnostic, and therefore downstream conclusions, we propose to circumvent that choice by conceptualizing the network diagnostic as a function of the parameter. As opposed to a single value, a network diagnostic curve describes the connectome topology at multiple scales — from the sparsest group of the strongest edges to the entire edge set. To relate these curves to executive function and other covariates, we use scalar-on-function regression, which is more flexible than previous functional data-based models used in network neuroscience. We then consider how systematic differences between networks can manifest in misalignment of diagnostic curves, and consequently propose a supervised curve alignment method that incorporates auxiliary information from other variables. Our algorithm performs both functional regression and alignment via an iterative, penalized, and nonlinear likelihood optimization. The illustrated method has the potential to improve the interpretability and generalizability of neuroscience studies where the goal is to study heterogeneity among a mixture of function- and scalar-valued measures. Cold Spring Harbor Laboratory 2023-07-15 /pmc/articles/PMC10370026/ /pubmed/37503017 http://dx.doi.org/10.1101/2023.07.13.548836 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Tu, Danni
Wrobel, Julia
Satterthwaite, Theodore D.
Goldsmith, Jeff
Gur, Ruben C.
Gur, Raquel E.
Gertheiss, Jan
Bassett, Dani S.
Shinohara, Russell T.
Regression and Alignment for Functional Data and Network Topology
title Regression and Alignment for Functional Data and Network Topology
title_full Regression and Alignment for Functional Data and Network Topology
title_fullStr Regression and Alignment for Functional Data and Network Topology
title_full_unstemmed Regression and Alignment for Functional Data and Network Topology
title_short Regression and Alignment for Functional Data and Network Topology
title_sort regression and alignment for functional data and network topology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10370026/
https://www.ncbi.nlm.nih.gov/pubmed/37503017
http://dx.doi.org/10.1101/2023.07.13.548836
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