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Integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder
Obesity is a chronic multifactorial disease characterized by the accumulation of body fat and serves as a gateway to a number of metabolic-related diseases. Epidemiologic data indicate that Obesity is acting as a risk factor for neuro-psychiatric disorders such as schizophrenia, major depression dis...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10370737/ https://www.ncbi.nlm.nih.gov/pubmed/37494308 http://dx.doi.org/10.1371/journal.pone.0276820 |
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author | Islam, Md Khairul Islam, Md Rakibul Rahman, Md Habibur Islam, Md Zahidul Hasan, Md Mehedi Mamun, Md Mainul Islam Moni, Mohammad Ali |
author_facet | Islam, Md Khairul Islam, Md Rakibul Rahman, Md Habibur Islam, Md Zahidul Hasan, Md Mehedi Mamun, Md Mainul Islam Moni, Mohammad Ali |
author_sort | Islam, Md Khairul |
collection | PubMed |
description | Obesity is a chronic multifactorial disease characterized by the accumulation of body fat and serves as a gateway to a number of metabolic-related diseases. Epidemiologic data indicate that Obesity is acting as a risk factor for neuro-psychiatric disorders such as schizophrenia, major depression disorder and vice versa. However, how obesity may biologically interact with neurodevelopmental or neurological psychiatric conditions influenced by hereditary, environmental, and other factors is entirely unknown. To address this issue, we have developed a pipeline that integrates bioinformatics and statistical approaches such as transcriptomic analysis to identify differentially expressed genes (DEGs) and molecular mechanisms in patients with psychiatric disorders that are also common in obese patients. Biomarker genes expressed in schizophrenia, major depression, and obesity have been used to demonstrate such relationships depending on the previous research studies. The highly expressed genes identify commonly altered signalling pathways, gene ontology pathways, and gene-disease associations across disorders. The proposed method identified 163 significant genes and 134 significant pathways shared between obesity and schizophrenia. Similarly, there are 247 significant genes and 65 significant pathways that are shared by obesity and major depressive disorder. These genes and pathways increase the likelihood that psychiatric disorders and obesity are pathogenic. Thus, this study may help in the development of a restorative approach that will ameliorate the bidirectional relation between obesity and psychiatric disorder. Finally, we also validated our findings using genome-wide association study (GWAS) and whole-genome sequence (WGS) data from SCZ, MDD, and OBE. We confirmed the likely involvement of four significant genes both in transcriptomic and GWAS/WGS data. Moreover, we have performed co-expression cluster analysis of the transcriptomic data and compared it with the results of transcriptomic differential expression analysis and GWAS/WGS. |
format | Online Article Text |
id | pubmed-10370737 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-103707372023-07-27 Integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder Islam, Md Khairul Islam, Md Rakibul Rahman, Md Habibur Islam, Md Zahidul Hasan, Md Mehedi Mamun, Md Mainul Islam Moni, Mohammad Ali PLoS One Research Article Obesity is a chronic multifactorial disease characterized by the accumulation of body fat and serves as a gateway to a number of metabolic-related diseases. Epidemiologic data indicate that Obesity is acting as a risk factor for neuro-psychiatric disorders such as schizophrenia, major depression disorder and vice versa. However, how obesity may biologically interact with neurodevelopmental or neurological psychiatric conditions influenced by hereditary, environmental, and other factors is entirely unknown. To address this issue, we have developed a pipeline that integrates bioinformatics and statistical approaches such as transcriptomic analysis to identify differentially expressed genes (DEGs) and molecular mechanisms in patients with psychiatric disorders that are also common in obese patients. Biomarker genes expressed in schizophrenia, major depression, and obesity have been used to demonstrate such relationships depending on the previous research studies. The highly expressed genes identify commonly altered signalling pathways, gene ontology pathways, and gene-disease associations across disorders. The proposed method identified 163 significant genes and 134 significant pathways shared between obesity and schizophrenia. Similarly, there are 247 significant genes and 65 significant pathways that are shared by obesity and major depressive disorder. These genes and pathways increase the likelihood that psychiatric disorders and obesity are pathogenic. Thus, this study may help in the development of a restorative approach that will ameliorate the bidirectional relation between obesity and psychiatric disorder. Finally, we also validated our findings using genome-wide association study (GWAS) and whole-genome sequence (WGS) data from SCZ, MDD, and OBE. We confirmed the likely involvement of four significant genes both in transcriptomic and GWAS/WGS data. Moreover, we have performed co-expression cluster analysis of the transcriptomic data and compared it with the results of transcriptomic differential expression analysis and GWAS/WGS. Public Library of Science 2023-07-26 /pmc/articles/PMC10370737/ /pubmed/37494308 http://dx.doi.org/10.1371/journal.pone.0276820 Text en © 2023 Islam et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Islam, Md Khairul Islam, Md Rakibul Rahman, Md Habibur Islam, Md Zahidul Hasan, Md Mehedi Mamun, Md Mainul Islam Moni, Mohammad Ali Integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder |
title | Integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder |
title_full | Integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder |
title_fullStr | Integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder |
title_full_unstemmed | Integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder |
title_short | Integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder |
title_sort | integrated bioinformatics and statistical approach to identify the cmmon mlecular mchanisms of oesity that are linked to the development of two psychiatric disorders: schizophrenia and major depressive disorder |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10370737/ https://www.ncbi.nlm.nih.gov/pubmed/37494308 http://dx.doi.org/10.1371/journal.pone.0276820 |
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