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A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis

Glaucoma is an acquired optic neuropathy, which can lead to irreversible vision loss. Deep learning(DL), especially convolutional neural networks(CNN), has achieved considerable success in the field of medical image recognition due to the availability of large-scale annotated datasets and CNNs. Howe...

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Autores principales: Li, Yi, Han, Yujie, Li, Zihan, Zhong, Yi, Guo, Zhifen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10372152/
https://www.ncbi.nlm.nih.gov/pubmed/37495578
http://dx.doi.org/10.1038/s41598-022-27045-6
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author Li, Yi
Han, Yujie
Li, Zihan
Zhong, Yi
Guo, Zhifen
author_facet Li, Yi
Han, Yujie
Li, Zihan
Zhong, Yi
Guo, Zhifen
author_sort Li, Yi
collection PubMed
description Glaucoma is an acquired optic neuropathy, which can lead to irreversible vision loss. Deep learning(DL), especially convolutional neural networks(CNN), has achieved considerable success in the field of medical image recognition due to the availability of large-scale annotated datasets and CNNs. However, obtaining fully annotated datasets like ImageNet in the medical field is still a challenge. Meanwhile, single-modal approaches remain both unreliable and inaccurate due to the diversity of glaucoma disease types and the complexity of symptoms. In this paper, a new multimodal dataset for glaucoma is constructed and a new multimodal neural network for glaucoma diagnosis and classification (GMNNnet) is proposed aiming to address both of these issues. Specifically, the dataset includes the five most important types of glaucoma labels, electronic medical records and four kinds of high-resolution medical images. The structure of GMNNnet consists of three branches. Branch 1 consisting of convolutional, cyclic and transposition layers processes patient metadata, branch 2 uses Unet to extract features from glaucoma segmentation based on domain knowledge, and branch 3 uses ResFormer to directly process glaucoma medical images.Branch one and branch two are mixed together and then processed by the Catboost classifier. We introduce a gradient-weighted class activation mapping (Grad-GAM) method to increase the interpretability of the model and a transfer learning method for the case of insufficient training data,i.e.,fine-tuning CNN models pre-trained from natural image dataset to medical image tasks. The results show that GMNNnet can better present the high-dimensional information of glaucoma and achieves excellent performance under multimodal data.
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spelling pubmed-103721522023-07-28 A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis Li, Yi Han, Yujie Li, Zihan Zhong, Yi Guo, Zhifen Sci Rep Article Glaucoma is an acquired optic neuropathy, which can lead to irreversible vision loss. Deep learning(DL), especially convolutional neural networks(CNN), has achieved considerable success in the field of medical image recognition due to the availability of large-scale annotated datasets and CNNs. However, obtaining fully annotated datasets like ImageNet in the medical field is still a challenge. Meanwhile, single-modal approaches remain both unreliable and inaccurate due to the diversity of glaucoma disease types and the complexity of symptoms. In this paper, a new multimodal dataset for glaucoma is constructed and a new multimodal neural network for glaucoma diagnosis and classification (GMNNnet) is proposed aiming to address both of these issues. Specifically, the dataset includes the five most important types of glaucoma labels, electronic medical records and four kinds of high-resolution medical images. The structure of GMNNnet consists of three branches. Branch 1 consisting of convolutional, cyclic and transposition layers processes patient metadata, branch 2 uses Unet to extract features from glaucoma segmentation based on domain knowledge, and branch 3 uses ResFormer to directly process glaucoma medical images.Branch one and branch two are mixed together and then processed by the Catboost classifier. We introduce a gradient-weighted class activation mapping (Grad-GAM) method to increase the interpretability of the model and a transfer learning method for the case of insufficient training data,i.e.,fine-tuning CNN models pre-trained from natural image dataset to medical image tasks. The results show that GMNNnet can better present the high-dimensional information of glaucoma and achieves excellent performance under multimodal data. Nature Publishing Group UK 2023-07-26 /pmc/articles/PMC10372152/ /pubmed/37495578 http://dx.doi.org/10.1038/s41598-022-27045-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Li, Yi
Han, Yujie
Li, Zihan
Zhong, Yi
Guo, Zhifen
A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis
title A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis
title_full A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis
title_fullStr A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis
title_full_unstemmed A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis
title_short A transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis
title_sort transfer learning-based multimodal neural network combining metadata and multiple medical images for glaucoma type diagnosis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10372152/
https://www.ncbi.nlm.nih.gov/pubmed/37495578
http://dx.doi.org/10.1038/s41598-022-27045-6
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