Cargando…
Parameter Estimation and Species Tree Rooting Using ALE and GeneRax
ALE and GeneRax are tools for probabilistic gene tree–species tree reconciliation. Based on a common underlying statistical model of how gene trees evolve along species trees, these methods rely on gene vs. species tree discordance to infer gene duplication, transfer, and loss events, map gene famil...
Autores principales: | Williams, Tom A, Davín, Adrián A, Morel, Benoit, Szánthó, Lénárd L, Spang, Anja, Stamatakis, Alexandros, Hugenholtz, Philip, Szöllősi, Gergely J |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10373948/ https://www.ncbi.nlm.nih.gov/pubmed/37463417 http://dx.doi.org/10.1093/gbe/evad134 |
Ejemplares similares
-
GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family
Tree Inference under Gene Duplication, Transfer, and Loss
por: Morel, Benoit, et al.
Publicado: (2020) -
SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss
por: Morel, Benoit, et al.
Publicado: (2022) -
RAxML Grove: an empirical phylogenetic tree database
por: Höhler, Dimitri, et al.
Publicado: (2021) -
NetRAX: accurate and fast maximum likelihood phylogenetic network inference
por: Lutteropp, Sarah, et al.
Publicado: (2022) -
ATP synthase evolution on a cross-braced dated tree of life
por: Mahendrarajah, Tara A., et al.
Publicado: (2023)