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Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping

In this study, we propose a high-throughput and low-cost automatic detection method based on deep learning to replace the inefficient manual counting of rapeseed siliques. First, a video is captured with a smartphone around the rapeseed plants in the silique stage. Feature point detection and matchi...

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Autores principales: Qiao, Yuhui, Liao, Qingxi, Zhang, Moran, Han, Binbin, Peng, Chengli, Huang, Zhenhao, Wang, Shaodong, Zhou, Guangsheng, Xu, Shengyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375295/
https://www.ncbi.nlm.nih.gov/pubmed/37521934
http://dx.doi.org/10.3389/fpls.2023.1188286
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author Qiao, Yuhui
Liao, Qingxi
Zhang, Moran
Han, Binbin
Peng, Chengli
Huang, Zhenhao
Wang, Shaodong
Zhou, Guangsheng
Xu, Shengyong
author_facet Qiao, Yuhui
Liao, Qingxi
Zhang, Moran
Han, Binbin
Peng, Chengli
Huang, Zhenhao
Wang, Shaodong
Zhou, Guangsheng
Xu, Shengyong
author_sort Qiao, Yuhui
collection PubMed
description In this study, we propose a high-throughput and low-cost automatic detection method based on deep learning to replace the inefficient manual counting of rapeseed siliques. First, a video is captured with a smartphone around the rapeseed plants in the silique stage. Feature point detection and matching based on SIFT operators are applied to the extracted video frames, and sparse point clouds are recovered using epipolar geometry and triangulation principles. The depth map is obtained by calculating the disparity of the matched images, and the dense point cloud is fused. The plant model of the whole rapeseed plant in the silique stage is reconstructed based on the structure-from-motion (SfM) algorithm, and the background is removed by using the passthrough filter. The downsampled 3D point cloud data is processed by the DGCNN network, and the point cloud is divided into two categories: sparse rapeseed canopy siliques and rapeseed stems. The sparse canopy siliques are then segmented from the original whole rapeseed siliques point cloud using the sparse-dense point cloud mapping method, which can effectively save running time and improve efficiency. Finally, Euclidean clustering segmentation is performed on the rapeseed canopy siliques, and the RANSAC algorithm is used to perform line segmentation on the connected siliques after clustering, obtaining the three-dimensional spatial position of each silique and counting the number of siliques. The proposed method was applied to identify 1457 siliques from 12 rapeseed plants, and the experimental results showed a recognition accuracy greater than 97.80%. The proposed method achieved good results in rapeseed silique recognition and provided a useful example for the application of deep learning networks in dense 3D point cloud segmentation.
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spelling pubmed-103752952023-07-29 Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping Qiao, Yuhui Liao, Qingxi Zhang, Moran Han, Binbin Peng, Chengli Huang, Zhenhao Wang, Shaodong Zhou, Guangsheng Xu, Shengyong Front Plant Sci Plant Science In this study, we propose a high-throughput and low-cost automatic detection method based on deep learning to replace the inefficient manual counting of rapeseed siliques. First, a video is captured with a smartphone around the rapeseed plants in the silique stage. Feature point detection and matching based on SIFT operators are applied to the extracted video frames, and sparse point clouds are recovered using epipolar geometry and triangulation principles. The depth map is obtained by calculating the disparity of the matched images, and the dense point cloud is fused. The plant model of the whole rapeseed plant in the silique stage is reconstructed based on the structure-from-motion (SfM) algorithm, and the background is removed by using the passthrough filter. The downsampled 3D point cloud data is processed by the DGCNN network, and the point cloud is divided into two categories: sparse rapeseed canopy siliques and rapeseed stems. The sparse canopy siliques are then segmented from the original whole rapeseed siliques point cloud using the sparse-dense point cloud mapping method, which can effectively save running time and improve efficiency. Finally, Euclidean clustering segmentation is performed on the rapeseed canopy siliques, and the RANSAC algorithm is used to perform line segmentation on the connected siliques after clustering, obtaining the three-dimensional spatial position of each silique and counting the number of siliques. The proposed method was applied to identify 1457 siliques from 12 rapeseed plants, and the experimental results showed a recognition accuracy greater than 97.80%. The proposed method achieved good results in rapeseed silique recognition and provided a useful example for the application of deep learning networks in dense 3D point cloud segmentation. Frontiers Media S.A. 2023-07-14 /pmc/articles/PMC10375295/ /pubmed/37521934 http://dx.doi.org/10.3389/fpls.2023.1188286 Text en Copyright © 2023 Qiao, Liao, Zhang, Han, Peng, Huang, Wang, Zhou and Xu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Qiao, Yuhui
Liao, Qingxi
Zhang, Moran
Han, Binbin
Peng, Chengli
Huang, Zhenhao
Wang, Shaodong
Zhou, Guangsheng
Xu, Shengyong
Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping
title Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping
title_full Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping
title_fullStr Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping
title_full_unstemmed Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping
title_short Point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping
title_sort point clouds segmentation of rapeseed siliques based on sparse-dense point clouds mapping
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375295/
https://www.ncbi.nlm.nih.gov/pubmed/37521934
http://dx.doi.org/10.3389/fpls.2023.1188286
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