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Theoretical and Data-Driven Approaches for Biomolecular Condensates

[Image: see text] Biomolecular condensation processes are increasingly recognized as a fundamental mechanism that living cells use to organize biomolecules in time and space. These processes can lead to the formation of membraneless organelles that enable cells to perform distinct biochemical proces...

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Autores principales: Saar, Kadi L., Qian, Daoyuan, Good, Lydia L., Morgunov, Alexey S., Collepardo-Guevara, Rosana, Best, Robert B., Knowles, Tuomas P. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375482/
https://www.ncbi.nlm.nih.gov/pubmed/37171907
http://dx.doi.org/10.1021/acs.chemrev.2c00586
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author Saar, Kadi L.
Qian, Daoyuan
Good, Lydia L.
Morgunov, Alexey S.
Collepardo-Guevara, Rosana
Best, Robert B.
Knowles, Tuomas P. J.
author_facet Saar, Kadi L.
Qian, Daoyuan
Good, Lydia L.
Morgunov, Alexey S.
Collepardo-Guevara, Rosana
Best, Robert B.
Knowles, Tuomas P. J.
author_sort Saar, Kadi L.
collection PubMed
description [Image: see text] Biomolecular condensation processes are increasingly recognized as a fundamental mechanism that living cells use to organize biomolecules in time and space. These processes can lead to the formation of membraneless organelles that enable cells to perform distinct biochemical processes in controlled local environments, thereby supplying them with an additional degree of spatial control relative to that achieved by membrane-bound organelles. This fundamental importance of biomolecular condensation has motivated a quest to discover and understand the molecular mechanisms and determinants that drive and control this process. Within this molecular viewpoint, computational methods can provide a unique angle to studying biomolecular condensation processes by contributing the resolution and scale that are challenging to reach with experimental techniques alone. In this Review, we focus on three types of dry-lab approaches: theoretical methods, physics-driven simulations and data-driven machine learning methods. We review recent progress in using these tools for probing biomolecular condensation across all three fields and outline the key advantages and limitations of each of the approaches. We further discuss some of the key outstanding challenges that we foresee the community addressing next in order to develop a more complete picture of the molecular driving forces behind biomolecular condensation processes and their biological roles in health and disease.
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spelling pubmed-103754822023-07-29 Theoretical and Data-Driven Approaches for Biomolecular Condensates Saar, Kadi L. Qian, Daoyuan Good, Lydia L. Morgunov, Alexey S. Collepardo-Guevara, Rosana Best, Robert B. Knowles, Tuomas P. J. Chem Rev [Image: see text] Biomolecular condensation processes are increasingly recognized as a fundamental mechanism that living cells use to organize biomolecules in time and space. These processes can lead to the formation of membraneless organelles that enable cells to perform distinct biochemical processes in controlled local environments, thereby supplying them with an additional degree of spatial control relative to that achieved by membrane-bound organelles. This fundamental importance of biomolecular condensation has motivated a quest to discover and understand the molecular mechanisms and determinants that drive and control this process. Within this molecular viewpoint, computational methods can provide a unique angle to studying biomolecular condensation processes by contributing the resolution and scale that are challenging to reach with experimental techniques alone. In this Review, we focus on three types of dry-lab approaches: theoretical methods, physics-driven simulations and data-driven machine learning methods. We review recent progress in using these tools for probing biomolecular condensation across all three fields and outline the key advantages and limitations of each of the approaches. We further discuss some of the key outstanding challenges that we foresee the community addressing next in order to develop a more complete picture of the molecular driving forces behind biomolecular condensation processes and their biological roles in health and disease. American Chemical Society 2023-05-12 /pmc/articles/PMC10375482/ /pubmed/37171907 http://dx.doi.org/10.1021/acs.chemrev.2c00586 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Saar, Kadi L.
Qian, Daoyuan
Good, Lydia L.
Morgunov, Alexey S.
Collepardo-Guevara, Rosana
Best, Robert B.
Knowles, Tuomas P. J.
Theoretical and Data-Driven Approaches for Biomolecular Condensates
title Theoretical and Data-Driven Approaches for Biomolecular Condensates
title_full Theoretical and Data-Driven Approaches for Biomolecular Condensates
title_fullStr Theoretical and Data-Driven Approaches for Biomolecular Condensates
title_full_unstemmed Theoretical and Data-Driven Approaches for Biomolecular Condensates
title_short Theoretical and Data-Driven Approaches for Biomolecular Condensates
title_sort theoretical and data-driven approaches for biomolecular condensates
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375482/
https://www.ncbi.nlm.nih.gov/pubmed/37171907
http://dx.doi.org/10.1021/acs.chemrev.2c00586
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