The complete chloroplast genome of Aegle marmelos and its phylogenetic analysis

Aegle marmelos (L.) Correa 1800, a plant belonging to the Rutaceae family, is extensively used in Tibetan medicine. We employed Illumina HiSeq reads to assemble the complete chloroplast (cp) genome of A. marmelos, which spans 144,538 bp. The genome comprises 114 genes, including 75 protein-coding ge...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Sijia, Xiang, Rushuang, Kong, Lingyang, Zhang, Zhanping, Lu, Jiaxin, Liu, Xiubo, Ma, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375917/
https://www.ncbi.nlm.nih.gov/pubmed/37521904
http://dx.doi.org/10.1080/23802359.2023.2238934
_version_ 1785079143058112512
author Wang, Sijia
Xiang, Rushuang
Kong, Lingyang
Zhang, Zhanping
Lu, Jiaxin
Liu, Xiubo
Ma, Wei
author_facet Wang, Sijia
Xiang, Rushuang
Kong, Lingyang
Zhang, Zhanping
Lu, Jiaxin
Liu, Xiubo
Ma, Wei
author_sort Wang, Sijia
collection PubMed
description Aegle marmelos (L.) Correa 1800, a plant belonging to the Rutaceae family, is extensively used in Tibetan medicine. We employed Illumina HiSeq reads to assemble the complete chloroplast (cp) genome of A. marmelos, which spans 144,538 bp. The genome comprises 114 genes, including 75 protein-coding genes, 31 tRNA genes, and 8 rRNA genes. It is characterized by four regions: The large single-copy (LSC) region (74,253 bp), the inverted repeat A (IRa) region (26,015 bp), the small single-copy (SSC) region (18,255 bp), and the inverted repeat B (IRb) region (26,015 bp). Phylogenomic analysis demonstrated a close relationship between A. marmelos and Citrus. The assembly of The cp genome in this study serves as a foundation for conservation efforts and phylogenetic investigations of A. marmelos, paving the way for future experimentation.
format Online
Article
Text
id pubmed-10375917
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-103759172023-07-29 The complete chloroplast genome of Aegle marmelos and its phylogenetic analysis Wang, Sijia Xiang, Rushuang Kong, Lingyang Zhang, Zhanping Lu, Jiaxin Liu, Xiubo Ma, Wei Mitochondrial DNA B Resour Plastome Report Aegle marmelos (L.) Correa 1800, a plant belonging to the Rutaceae family, is extensively used in Tibetan medicine. We employed Illumina HiSeq reads to assemble the complete chloroplast (cp) genome of A. marmelos, which spans 144,538 bp. The genome comprises 114 genes, including 75 protein-coding genes, 31 tRNA genes, and 8 rRNA genes. It is characterized by four regions: The large single-copy (LSC) region (74,253 bp), the inverted repeat A (IRa) region (26,015 bp), the small single-copy (SSC) region (18,255 bp), and the inverted repeat B (IRb) region (26,015 bp). Phylogenomic analysis demonstrated a close relationship between A. marmelos and Citrus. The assembly of The cp genome in this study serves as a foundation for conservation efforts and phylogenetic investigations of A. marmelos, paving the way for future experimentation. Taylor & Francis 2023-07-27 /pmc/articles/PMC10375917/ /pubmed/37521904 http://dx.doi.org/10.1080/23802359.2023.2238934 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Report
Wang, Sijia
Xiang, Rushuang
Kong, Lingyang
Zhang, Zhanping
Lu, Jiaxin
Liu, Xiubo
Ma, Wei
The complete chloroplast genome of Aegle marmelos and its phylogenetic analysis
title The complete chloroplast genome of Aegle marmelos and its phylogenetic analysis
title_full The complete chloroplast genome of Aegle marmelos and its phylogenetic analysis
title_fullStr The complete chloroplast genome of Aegle marmelos and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome of Aegle marmelos and its phylogenetic analysis
title_short The complete chloroplast genome of Aegle marmelos and its phylogenetic analysis
title_sort complete chloroplast genome of aegle marmelos and its phylogenetic analysis
topic Plastome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375917/
https://www.ncbi.nlm.nih.gov/pubmed/37521904
http://dx.doi.org/10.1080/23802359.2023.2238934
work_keys_str_mv AT wangsijia thecompletechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT xiangrushuang thecompletechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT konglingyang thecompletechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT zhangzhanping thecompletechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT lujiaxin thecompletechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT liuxiubo thecompletechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT mawei thecompletechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT wangsijia completechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT xiangrushuang completechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT konglingyang completechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT zhangzhanping completechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT lujiaxin completechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT liuxiubo completechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis
AT mawei completechloroplastgenomeofaeglemarmelosanditsphylogeneticanalysis

Ejemplares similares