The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis

Cumin (Cuminum cyminum L). belongs to the family Apiaceae and the order Apiales, which is a widely grown spice and medicinal plant in Xinjiang province, China. In the current study, whole genome sequencing of C. cyminum was performed using the Illumina HiSeq 4000 platform, and the complete mitogenom...

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Autores principales: Chen, Ge, Kang, Ruiping, Wang, Zihao, Jiang, Yu, Zhou, Huiying, Abuduaini, Aifeire, Suo, Feiya, Huang, Luodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Mitogenome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375935/
https://www.ncbi.nlm.nih.gov/pubmed/37521907
http://dx.doi.org/10.1080/23802359.2023.2238357
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author Chen, Ge
Kang, Ruiping
Wang, Zihao
Jiang, Yu
Zhou, Huiying
Abuduaini, Aifeire
Suo, Feiya
Huang, Luodong
author_facet Chen, Ge
Kang, Ruiping
Wang, Zihao
Jiang, Yu
Zhou, Huiying
Abuduaini, Aifeire
Suo, Feiya
Huang, Luodong
author_sort Chen, Ge
collection PubMed
description Cumin (Cuminum cyminum L). belongs to the family Apiaceae and the order Apiales, which is a widely grown spice and medicinal plant in Xinjiang province, China. In the current study, whole genome sequencing of C. cyminum was performed using the Illumina HiSeq 4000 platform, and the complete mitogenome sequence was assembled and annotated. We found that the single circular mitogenome of C. cyminum was 246,721 bp in length, and has about 45.5% GC content. It comprised 73 genes in the coding region (35 protein-coding genes, 18 tRNA genes, 3 rRNA genes, and 15 open-reading frames) and a non-coding region. Phylogenetic analysis indicated that C. cyminum is closely related to Daucus carota and the subtribes Daucinae. The mitogenome of C. cyminum revealed its phylogenetic relationships with other species in the Apiaceae family, which would further help in understanding its evolution.
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spelling pubmed-103759352023-07-29 The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis Chen, Ge Kang, Ruiping Wang, Zihao Jiang, Yu Zhou, Huiying Abuduaini, Aifeire Suo, Feiya Huang, Luodong Mitochondrial DNA B Resour Mitogenome Report Cumin (Cuminum cyminum L). belongs to the family Apiaceae and the order Apiales, which is a widely grown spice and medicinal plant in Xinjiang province, China. In the current study, whole genome sequencing of C. cyminum was performed using the Illumina HiSeq 4000 platform, and the complete mitogenome sequence was assembled and annotated. We found that the single circular mitogenome of C. cyminum was 246,721 bp in length, and has about 45.5% GC content. It comprised 73 genes in the coding region (35 protein-coding genes, 18 tRNA genes, 3 rRNA genes, and 15 open-reading frames) and a non-coding region. Phylogenetic analysis indicated that C. cyminum is closely related to Daucus carota and the subtribes Daucinae. The mitogenome of C. cyminum revealed its phylogenetic relationships with other species in the Apiaceae family, which would further help in understanding its evolution. Taylor & Francis 2023-07-27 /pmc/articles/PMC10375935/ /pubmed/37521907 http://dx.doi.org/10.1080/23802359.2023.2238357 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Mitogenome Report
Chen, Ge
Kang, Ruiping
Wang, Zihao
Jiang, Yu
Zhou, Huiying
Abuduaini, Aifeire
Suo, Feiya
Huang, Luodong
The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis
title The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis
title_full The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis
title_fullStr The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis
title_full_unstemmed The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis
title_short The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis
title_sort complete mitochondrial genome of cuminum cyminum (apiales: apiaceae) and phylogenetic analysis
topic Mitogenome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375935/
https://www.ncbi.nlm.nih.gov/pubmed/37521907
http://dx.doi.org/10.1080/23802359.2023.2238357
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