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Radiomics-Based Quality Control System for Automatic Cardiac Segmentation: A Feasibility Study

Purpose: In the past decade, there has been a rapid increase in the development of automatic cardiac segmentation methods. However, the automatic quality control (QC) of these segmentation methods has received less attention. This study aims to address this gap by developing an automatic pipeline th...

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Detalles Bibliográficos
Autores principales: Liu, Qiming, Lu, Qifan, Chai, Yezi, Tao, Zhengyu, Wu, Qizhen, Jiang, Meng, Pu, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10376472/
https://www.ncbi.nlm.nih.gov/pubmed/37508818
http://dx.doi.org/10.3390/bioengineering10070791
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author Liu, Qiming
Lu, Qifan
Chai, Yezi
Tao, Zhengyu
Wu, Qizhen
Jiang, Meng
Pu, Jun
author_facet Liu, Qiming
Lu, Qifan
Chai, Yezi
Tao, Zhengyu
Wu, Qizhen
Jiang, Meng
Pu, Jun
author_sort Liu, Qiming
collection PubMed
description Purpose: In the past decade, there has been a rapid increase in the development of automatic cardiac segmentation methods. However, the automatic quality control (QC) of these segmentation methods has received less attention. This study aims to address this gap by developing an automatic pipeline that incorporates DL-based cardiac segmentation and radiomics-based quality control. Methods: In the DL-based localization and segmentation part, the entire heart was first located and cropped. Then, the cropped images were further utilized for the segmentation of the right ventricle cavity (RVC), myocardium (MYO), and left ventricle cavity (LVC). As for the radiomics-based QC part, a training radiomics dataset was created with segmentation tasks of various quality. This dataset was used for feature extraction, selection, and QC model development. The model performance was then evaluated using both internal and external testing datasets. Results: In the internal testing dataset, the segmentation model demonstrated a great performance with a dice similarity coefficient (DSC) of 0.954 for whole heart segmentations. Images were then appropriately cropped to 160 × 160 pixels. The models also performed well for cardiac substructure segmentations. The DSC values were 0.863, 0.872, and 0.940 for RVC, MYO, and LVC for 2D masks and 0.928, 0.886, and 0.962 for RVC, MYO, and LVC for 3D masks with an attention-UNet. After feature selection with the radiomics dataset, we developed a series of models to predict the automatic segmentation quality and its DSC value for the RVC, MYO, and LVC structures. The mean absolute values for our best prediction models were 0.060, 0.032, and 0.021 for 2D segmentations and 0.027, 0.017, and 0.011 for 3D segmentations, respectively. Additionally, the radiomics-based classification models demonstrated a high negative detection rate of >0.85 in all 2D groups. In the external dataset, models showed similar results. Conclusions: We developed a pipeline including cardiac substructure segmentation and QC at both the slice (2D) and subject (3D) levels. Our results demonstrate that the radiomics method possesses great potential for the automatic QC of cardiac segmentation.
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spelling pubmed-103764722023-07-29 Radiomics-Based Quality Control System for Automatic Cardiac Segmentation: A Feasibility Study Liu, Qiming Lu, Qifan Chai, Yezi Tao, Zhengyu Wu, Qizhen Jiang, Meng Pu, Jun Bioengineering (Basel) Article Purpose: In the past decade, there has been a rapid increase in the development of automatic cardiac segmentation methods. However, the automatic quality control (QC) of these segmentation methods has received less attention. This study aims to address this gap by developing an automatic pipeline that incorporates DL-based cardiac segmentation and radiomics-based quality control. Methods: In the DL-based localization and segmentation part, the entire heart was first located and cropped. Then, the cropped images were further utilized for the segmentation of the right ventricle cavity (RVC), myocardium (MYO), and left ventricle cavity (LVC). As for the radiomics-based QC part, a training radiomics dataset was created with segmentation tasks of various quality. This dataset was used for feature extraction, selection, and QC model development. The model performance was then evaluated using both internal and external testing datasets. Results: In the internal testing dataset, the segmentation model demonstrated a great performance with a dice similarity coefficient (DSC) of 0.954 for whole heart segmentations. Images were then appropriately cropped to 160 × 160 pixels. The models also performed well for cardiac substructure segmentations. The DSC values were 0.863, 0.872, and 0.940 for RVC, MYO, and LVC for 2D masks and 0.928, 0.886, and 0.962 for RVC, MYO, and LVC for 3D masks with an attention-UNet. After feature selection with the radiomics dataset, we developed a series of models to predict the automatic segmentation quality and its DSC value for the RVC, MYO, and LVC structures. The mean absolute values for our best prediction models were 0.060, 0.032, and 0.021 for 2D segmentations and 0.027, 0.017, and 0.011 for 3D segmentations, respectively. Additionally, the radiomics-based classification models demonstrated a high negative detection rate of >0.85 in all 2D groups. In the external dataset, models showed similar results. Conclusions: We developed a pipeline including cardiac substructure segmentation and QC at both the slice (2D) and subject (3D) levels. Our results demonstrate that the radiomics method possesses great potential for the automatic QC of cardiac segmentation. MDPI 2023-07-01 /pmc/articles/PMC10376472/ /pubmed/37508818 http://dx.doi.org/10.3390/bioengineering10070791 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Qiming
Lu, Qifan
Chai, Yezi
Tao, Zhengyu
Wu, Qizhen
Jiang, Meng
Pu, Jun
Radiomics-Based Quality Control System for Automatic Cardiac Segmentation: A Feasibility Study
title Radiomics-Based Quality Control System for Automatic Cardiac Segmentation: A Feasibility Study
title_full Radiomics-Based Quality Control System for Automatic Cardiac Segmentation: A Feasibility Study
title_fullStr Radiomics-Based Quality Control System for Automatic Cardiac Segmentation: A Feasibility Study
title_full_unstemmed Radiomics-Based Quality Control System for Automatic Cardiac Segmentation: A Feasibility Study
title_short Radiomics-Based Quality Control System for Automatic Cardiac Segmentation: A Feasibility Study
title_sort radiomics-based quality control system for automatic cardiac segmentation: a feasibility study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10376472/
https://www.ncbi.nlm.nih.gov/pubmed/37508818
http://dx.doi.org/10.3390/bioengineering10070791
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