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Validation of an Ultraviolet Light Response Gene Signature for Predicting Prognosis in Patients with Uveal Melanoma

Uveal melanoma (UVM) is a highly aggressive ocular cancer with limited therapeutic options and poor prognosis particularly for patients with liver metastasis. As such, the identification of new prognostic biomarkers is critical for developing effective treatment strategies. In this study, we aimed t...

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Autores principales: Orozco, Carlos A., Mejía-García, Alejandro, Ramírez, Marcela, González, Johanna, Castro-Vega, Luis, Kreider, Richard B., Serrano, Silvia, Combita, Alba Lucia, Bonilla, Diego A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10377706/
https://www.ncbi.nlm.nih.gov/pubmed/37509183
http://dx.doi.org/10.3390/biom13071148
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author Orozco, Carlos A.
Mejía-García, Alejandro
Ramírez, Marcela
González, Johanna
Castro-Vega, Luis
Kreider, Richard B.
Serrano, Silvia
Combita, Alba Lucia
Bonilla, Diego A.
author_facet Orozco, Carlos A.
Mejía-García, Alejandro
Ramírez, Marcela
González, Johanna
Castro-Vega, Luis
Kreider, Richard B.
Serrano, Silvia
Combita, Alba Lucia
Bonilla, Diego A.
author_sort Orozco, Carlos A.
collection PubMed
description Uveal melanoma (UVM) is a highly aggressive ocular cancer with limited therapeutic options and poor prognosis particularly for patients with liver metastasis. As such, the identification of new prognostic biomarkers is critical for developing effective treatment strategies. In this study, we aimed to investigate the potential of an ultraviolet light response gene signature to predict the prognosis of UVM patients. Our approach involved the development of a prognostic model based on genes associated with the cellular response to UV light. By employing this model, we generated risk scores to stratify patients into high- and low-risk groups. Furthermore, we conducted differential expression analysis between these two groups and explored the estimation of immune infiltration. To validate our findings, we applied our methodology to an independent UVM cohort. Through our study, we introduced a novel survival prediction tool and shed light on the underlying cellular processes within UVM tumors, emphasizing the involvement of immune subsets in tumor progression.
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spelling pubmed-103777062023-07-29 Validation of an Ultraviolet Light Response Gene Signature for Predicting Prognosis in Patients with Uveal Melanoma Orozco, Carlos A. Mejía-García, Alejandro Ramírez, Marcela González, Johanna Castro-Vega, Luis Kreider, Richard B. Serrano, Silvia Combita, Alba Lucia Bonilla, Diego A. Biomolecules Article Uveal melanoma (UVM) is a highly aggressive ocular cancer with limited therapeutic options and poor prognosis particularly for patients with liver metastasis. As such, the identification of new prognostic biomarkers is critical for developing effective treatment strategies. In this study, we aimed to investigate the potential of an ultraviolet light response gene signature to predict the prognosis of UVM patients. Our approach involved the development of a prognostic model based on genes associated with the cellular response to UV light. By employing this model, we generated risk scores to stratify patients into high- and low-risk groups. Furthermore, we conducted differential expression analysis between these two groups and explored the estimation of immune infiltration. To validate our findings, we applied our methodology to an independent UVM cohort. Through our study, we introduced a novel survival prediction tool and shed light on the underlying cellular processes within UVM tumors, emphasizing the involvement of immune subsets in tumor progression. MDPI 2023-07-19 /pmc/articles/PMC10377706/ /pubmed/37509183 http://dx.doi.org/10.3390/biom13071148 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Orozco, Carlos A.
Mejía-García, Alejandro
Ramírez, Marcela
González, Johanna
Castro-Vega, Luis
Kreider, Richard B.
Serrano, Silvia
Combita, Alba Lucia
Bonilla, Diego A.
Validation of an Ultraviolet Light Response Gene Signature for Predicting Prognosis in Patients with Uveal Melanoma
title Validation of an Ultraviolet Light Response Gene Signature for Predicting Prognosis in Patients with Uveal Melanoma
title_full Validation of an Ultraviolet Light Response Gene Signature for Predicting Prognosis in Patients with Uveal Melanoma
title_fullStr Validation of an Ultraviolet Light Response Gene Signature for Predicting Prognosis in Patients with Uveal Melanoma
title_full_unstemmed Validation of an Ultraviolet Light Response Gene Signature for Predicting Prognosis in Patients with Uveal Melanoma
title_short Validation of an Ultraviolet Light Response Gene Signature for Predicting Prognosis in Patients with Uveal Melanoma
title_sort validation of an ultraviolet light response gene signature for predicting prognosis in patients with uveal melanoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10377706/
https://www.ncbi.nlm.nih.gov/pubmed/37509183
http://dx.doi.org/10.3390/biom13071148
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