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Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers

The present study aimed to establish human earwax as a potential source of DNA evidence that could be effectively used in human identification. Sixty earwax samples were obtained from 15 healthy male and female Saudi volunteers living in Riyadh, Saudi Arabia. Four consecutive earwax swab samples wer...

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Detalles Bibliográficos
Autores principales: Amer, Sayed Amin, Alotaibi, Maha Nawar, Shahid, Sajjad, Alsafrani, Mahmoud, Chaudhary, Abdul Rauf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10378584/
https://www.ncbi.nlm.nih.gov/pubmed/37504278
http://dx.doi.org/10.3390/cimb45070362
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author Amer, Sayed Amin
Alotaibi, Maha Nawar
Shahid, Sajjad
Alsafrani, Mahmoud
Chaudhary, Abdul Rauf
author_facet Amer, Sayed Amin
Alotaibi, Maha Nawar
Shahid, Sajjad
Alsafrani, Mahmoud
Chaudhary, Abdul Rauf
author_sort Amer, Sayed Amin
collection PubMed
description The present study aimed to establish human earwax as a potential source of DNA evidence that could be effectively used in human identification. Sixty earwax samples were obtained from 15 healthy male and female Saudi volunteers living in Riyadh, Saudi Arabia. Four consecutive earwax swab samples were obtained from each volunteer and stored for 1, 15, 30 and 60 days. Earwax samples were stored at room temperature (20–22 °C). Reference oral swab was also taken from each volunteer. DNA was extracted by QIAamp DNA Mini kit and quantified by real-time polymerase chain reaction (RT-PCR) on 7500 Thermal Cycler. Autosomal STR loci were amplified using AmpFLSTR™ Identifiler™ Plus PCR Amplification Kit (Thermo Fisher Scientific, Carlsbad, CA, USA). Amplified fragments were size separated and analyzed on a 3500 Genetic Analyzer. Complete autosomal STR profiles were obtained from the earwax swabs of all the volunteers stored up to 30 days after the collection. Some STR profiles were partially obtained 60 days after the earwax collection. Allelic drop-out, allelic drop-in, and stutters were seen in earwax samples analyzed 60 days after the collection. The results have shown that human earwax can be a potential source of DNA evidence for human identification up to 30 days after the earwax collection. It is recommended to quickly analyze earwax samples or store them at room temperature or at −10 °C after their recovery from the crime scene.
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spelling pubmed-103785842023-07-29 Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers Amer, Sayed Amin Alotaibi, Maha Nawar Shahid, Sajjad Alsafrani, Mahmoud Chaudhary, Abdul Rauf Curr Issues Mol Biol Article The present study aimed to establish human earwax as a potential source of DNA evidence that could be effectively used in human identification. Sixty earwax samples were obtained from 15 healthy male and female Saudi volunteers living in Riyadh, Saudi Arabia. Four consecutive earwax swab samples were obtained from each volunteer and stored for 1, 15, 30 and 60 days. Earwax samples were stored at room temperature (20–22 °C). Reference oral swab was also taken from each volunteer. DNA was extracted by QIAamp DNA Mini kit and quantified by real-time polymerase chain reaction (RT-PCR) on 7500 Thermal Cycler. Autosomal STR loci were amplified using AmpFLSTR™ Identifiler™ Plus PCR Amplification Kit (Thermo Fisher Scientific, Carlsbad, CA, USA). Amplified fragments were size separated and analyzed on a 3500 Genetic Analyzer. Complete autosomal STR profiles were obtained from the earwax swabs of all the volunteers stored up to 30 days after the collection. Some STR profiles were partially obtained 60 days after the earwax collection. Allelic drop-out, allelic drop-in, and stutters were seen in earwax samples analyzed 60 days after the collection. The results have shown that human earwax can be a potential source of DNA evidence for human identification up to 30 days after the earwax collection. It is recommended to quickly analyze earwax samples or store them at room temperature or at −10 °C after their recovery from the crime scene. MDPI 2023-07-10 /pmc/articles/PMC10378584/ /pubmed/37504278 http://dx.doi.org/10.3390/cimb45070362 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Amer, Sayed Amin
Alotaibi, Maha Nawar
Shahid, Sajjad
Alsafrani, Mahmoud
Chaudhary, Abdul Rauf
Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers
title Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers
title_full Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers
title_fullStr Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers
title_full_unstemmed Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers
title_short Short Tandem Repeat (STR) Profiling of Earwax DNA Obtained from Healthy Volunteers
title_sort short tandem repeat (str) profiling of earwax dna obtained from healthy volunteers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10378584/
https://www.ncbi.nlm.nih.gov/pubmed/37504278
http://dx.doi.org/10.3390/cimb45070362
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