Cargando…
Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment
The black sea bass, Centropristis striata, is a potential candidate for commercial aquaculture. Due to inadequate removal of nitrogen in its breeding environment, C. striata exhibits increased nitrate concentration, which can cause acute toxicity, including energy metabolism damage and tissue damage...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10378819/ https://www.ncbi.nlm.nih.gov/pubmed/37510344 http://dx.doi.org/10.3390/genes14071440 |
_version_ | 1785079860938407936 |
---|---|
author | Liu, Bingjian Jin, Xun Zhang, Kun Liu, Yifan Wang, Shaowen Chen, Shiyi Zhang, Shufei Yin, Xiaolong |
author_facet | Liu, Bingjian Jin, Xun Zhang, Kun Liu, Yifan Wang, Shaowen Chen, Shiyi Zhang, Shufei Yin, Xiaolong |
author_sort | Liu, Bingjian |
collection | PubMed |
description | The black sea bass, Centropristis striata, is a potential candidate for commercial aquaculture. Due to inadequate removal of nitrogen in its breeding environment, C. striata exhibits increased nitrate concentration, which can cause acute toxicity, including energy metabolism damage and tissue damage. Therefore, RNA-seq technology was applied to characterize genes associated with toxicity tolerance under nitrate stress. The nitrate treatment caused significant changes in a total of 8920 genes, of which 2949 genes were up-regulated and 5971 genes were down-regulated. It was found that significantly enriched GO terms and KEGG were associated with blood microparticles, inhibitors of enzyme activity, and complement and coagulation cascade pathways. Furthermore, through bioinformatics analysis, it was found that these different pathways obtained in GO and KEGG enrichment analysis were mostly related to the immune and inflammatory response of fish. This study expands our understanding of the mechanism of nitrate stress affecting the liver function of C. striata. |
format | Online Article Text |
id | pubmed-10378819 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-103788192023-07-29 Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment Liu, Bingjian Jin, Xun Zhang, Kun Liu, Yifan Wang, Shaowen Chen, Shiyi Zhang, Shufei Yin, Xiaolong Genes (Basel) Article The black sea bass, Centropristis striata, is a potential candidate for commercial aquaculture. Due to inadequate removal of nitrogen in its breeding environment, C. striata exhibits increased nitrate concentration, which can cause acute toxicity, including energy metabolism damage and tissue damage. Therefore, RNA-seq technology was applied to characterize genes associated with toxicity tolerance under nitrate stress. The nitrate treatment caused significant changes in a total of 8920 genes, of which 2949 genes were up-regulated and 5971 genes were down-regulated. It was found that significantly enriched GO terms and KEGG were associated with blood microparticles, inhibitors of enzyme activity, and complement and coagulation cascade pathways. Furthermore, through bioinformatics analysis, it was found that these different pathways obtained in GO and KEGG enrichment analysis were mostly related to the immune and inflammatory response of fish. This study expands our understanding of the mechanism of nitrate stress affecting the liver function of C. striata. MDPI 2023-07-13 /pmc/articles/PMC10378819/ /pubmed/37510344 http://dx.doi.org/10.3390/genes14071440 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Liu, Bingjian Jin, Xun Zhang, Kun Liu, Yifan Wang, Shaowen Chen, Shiyi Zhang, Shufei Yin, Xiaolong Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment |
title | Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment |
title_full | Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment |
title_fullStr | Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment |
title_full_unstemmed | Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment |
title_short | Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment |
title_sort | transcriptomic analysis of liver tissue of black sea bass (centropristis striata) exposed to high nitrogen environment |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10378819/ https://www.ncbi.nlm.nih.gov/pubmed/37510344 http://dx.doi.org/10.3390/genes14071440 |
work_keys_str_mv | AT liubingjian transcriptomicanalysisoflivertissueofblackseabasscentropristisstriataexposedtohighnitrogenenvironment AT jinxun transcriptomicanalysisoflivertissueofblackseabasscentropristisstriataexposedtohighnitrogenenvironment AT zhangkun transcriptomicanalysisoflivertissueofblackseabasscentropristisstriataexposedtohighnitrogenenvironment AT liuyifan transcriptomicanalysisoflivertissueofblackseabasscentropristisstriataexposedtohighnitrogenenvironment AT wangshaowen transcriptomicanalysisoflivertissueofblackseabasscentropristisstriataexposedtohighnitrogenenvironment AT chenshiyi transcriptomicanalysisoflivertissueofblackseabasscentropristisstriataexposedtohighnitrogenenvironment AT zhangshufei transcriptomicanalysisoflivertissueofblackseabasscentropristisstriataexposedtohighnitrogenenvironment AT yinxiaolong transcriptomicanalysisoflivertissueofblackseabasscentropristisstriataexposedtohighnitrogenenvironment |