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Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment

The black sea bass, Centropristis striata, is a potential candidate for commercial aquaculture. Due to inadequate removal of nitrogen in its breeding environment, C. striata exhibits increased nitrate concentration, which can cause acute toxicity, including energy metabolism damage and tissue damage...

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Detalles Bibliográficos
Autores principales: Liu, Bingjian, Jin, Xun, Zhang, Kun, Liu, Yifan, Wang, Shaowen, Chen, Shiyi, Zhang, Shufei, Yin, Xiaolong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10378819/
https://www.ncbi.nlm.nih.gov/pubmed/37510344
http://dx.doi.org/10.3390/genes14071440
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author Liu, Bingjian
Jin, Xun
Zhang, Kun
Liu, Yifan
Wang, Shaowen
Chen, Shiyi
Zhang, Shufei
Yin, Xiaolong
author_facet Liu, Bingjian
Jin, Xun
Zhang, Kun
Liu, Yifan
Wang, Shaowen
Chen, Shiyi
Zhang, Shufei
Yin, Xiaolong
author_sort Liu, Bingjian
collection PubMed
description The black sea bass, Centropristis striata, is a potential candidate for commercial aquaculture. Due to inadequate removal of nitrogen in its breeding environment, C. striata exhibits increased nitrate concentration, which can cause acute toxicity, including energy metabolism damage and tissue damage. Therefore, RNA-seq technology was applied to characterize genes associated with toxicity tolerance under nitrate stress. The nitrate treatment caused significant changes in a total of 8920 genes, of which 2949 genes were up-regulated and 5971 genes were down-regulated. It was found that significantly enriched GO terms and KEGG were associated with blood microparticles, inhibitors of enzyme activity, and complement and coagulation cascade pathways. Furthermore, through bioinformatics analysis, it was found that these different pathways obtained in GO and KEGG enrichment analysis were mostly related to the immune and inflammatory response of fish. This study expands our understanding of the mechanism of nitrate stress affecting the liver function of C. striata.
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spelling pubmed-103788192023-07-29 Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment Liu, Bingjian Jin, Xun Zhang, Kun Liu, Yifan Wang, Shaowen Chen, Shiyi Zhang, Shufei Yin, Xiaolong Genes (Basel) Article The black sea bass, Centropristis striata, is a potential candidate for commercial aquaculture. Due to inadequate removal of nitrogen in its breeding environment, C. striata exhibits increased nitrate concentration, which can cause acute toxicity, including energy metabolism damage and tissue damage. Therefore, RNA-seq technology was applied to characterize genes associated with toxicity tolerance under nitrate stress. The nitrate treatment caused significant changes in a total of 8920 genes, of which 2949 genes were up-regulated and 5971 genes were down-regulated. It was found that significantly enriched GO terms and KEGG were associated with blood microparticles, inhibitors of enzyme activity, and complement and coagulation cascade pathways. Furthermore, through bioinformatics analysis, it was found that these different pathways obtained in GO and KEGG enrichment analysis were mostly related to the immune and inflammatory response of fish. This study expands our understanding of the mechanism of nitrate stress affecting the liver function of C. striata. MDPI 2023-07-13 /pmc/articles/PMC10378819/ /pubmed/37510344 http://dx.doi.org/10.3390/genes14071440 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Bingjian
Jin, Xun
Zhang, Kun
Liu, Yifan
Wang, Shaowen
Chen, Shiyi
Zhang, Shufei
Yin, Xiaolong
Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment
title Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment
title_full Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment
title_fullStr Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment
title_full_unstemmed Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment
title_short Transcriptomic Analysis of Liver Tissue of Black Sea Bass (Centropristis striata) Exposed to High Nitrogen Environment
title_sort transcriptomic analysis of liver tissue of black sea bass (centropristis striata) exposed to high nitrogen environment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10378819/
https://www.ncbi.nlm.nih.gov/pubmed/37510344
http://dx.doi.org/10.3390/genes14071440
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