Cargando…

APOA2: New Target for Molecular Hydrogen Therapy in Sepsis-Related Lung Injury Based on Proteomic and Genomic Analysis

Target biomarkers for H(2) at both the protein and genome levels are still unclear. In this study, quantitative proteomics acquired from a mouse model were first analyzed. At the same time, functional pathway analysis helped identify functional pathways at the protein level. Then, bioinformatics on...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Yuanlin, Fan, Yan, Jiang, Yi, Wang, Enquan, Song, Yu, Chen, Hongguang, Xu, Feier, Xie, Keliang, Yu, Yonghao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10379236/
https://www.ncbi.nlm.nih.gov/pubmed/37511084
http://dx.doi.org/10.3390/ijms241411325
_version_ 1785079964806152192
author Wang, Yuanlin
Fan, Yan
Jiang, Yi
Wang, Enquan
Song, Yu
Chen, Hongguang
Xu, Feier
Xie, Keliang
Yu, Yonghao
author_facet Wang, Yuanlin
Fan, Yan
Jiang, Yi
Wang, Enquan
Song, Yu
Chen, Hongguang
Xu, Feier
Xie, Keliang
Yu, Yonghao
author_sort Wang, Yuanlin
collection PubMed
description Target biomarkers for H(2) at both the protein and genome levels are still unclear. In this study, quantitative proteomics acquired from a mouse model were first analyzed. At the same time, functional pathway analysis helped identify functional pathways at the protein level. Then, bioinformatics on mRNA sequencing data were conducted between sepsis and normal mouse models. Differential expressional genes with the closest relationship to disease status and development were identified through module correlation analysis. Then, common biomarkers in proteomics and transcriptomics were extracted as target biomarkers. Through analyzing expression quantitative trait locus (eQTL) and genome-wide association studies (GWAS), colocalization analysis on Apoa2 and sepsis phenotype was conducted by summary-data-based Mendelian randomization (SMR). Then, two-sample and drug-target, syndrome Mendelian randomization (MR) analyses were all conducted using the Twosample R package. For protein level, protein quantitative trait loci (pQTLs) of the target biomarker were also included in MR. Animal experiments helped validate these results. As a result, Apoa2 protein or mRNA was identified as a target biomarker for H(2) with a protective, causal relationship with sepsis. HDL and type 2 diabetes were proven to possess causal relationships with sepsis. The agitation and inhibition of Apoa2 were indicated to influence sepsis and related syndromes. In conclusion, we first proposed Apoa2 as a target for H(2) treatment.
format Online
Article
Text
id pubmed-10379236
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-103792362023-07-29 APOA2: New Target for Molecular Hydrogen Therapy in Sepsis-Related Lung Injury Based on Proteomic and Genomic Analysis Wang, Yuanlin Fan, Yan Jiang, Yi Wang, Enquan Song, Yu Chen, Hongguang Xu, Feier Xie, Keliang Yu, Yonghao Int J Mol Sci Article Target biomarkers for H(2) at both the protein and genome levels are still unclear. In this study, quantitative proteomics acquired from a mouse model were first analyzed. At the same time, functional pathway analysis helped identify functional pathways at the protein level. Then, bioinformatics on mRNA sequencing data were conducted between sepsis and normal mouse models. Differential expressional genes with the closest relationship to disease status and development were identified through module correlation analysis. Then, common biomarkers in proteomics and transcriptomics were extracted as target biomarkers. Through analyzing expression quantitative trait locus (eQTL) and genome-wide association studies (GWAS), colocalization analysis on Apoa2 and sepsis phenotype was conducted by summary-data-based Mendelian randomization (SMR). Then, two-sample and drug-target, syndrome Mendelian randomization (MR) analyses were all conducted using the Twosample R package. For protein level, protein quantitative trait loci (pQTLs) of the target biomarker were also included in MR. Animal experiments helped validate these results. As a result, Apoa2 protein or mRNA was identified as a target biomarker for H(2) with a protective, causal relationship with sepsis. HDL and type 2 diabetes were proven to possess causal relationships with sepsis. The agitation and inhibition of Apoa2 were indicated to influence sepsis and related syndromes. In conclusion, we first proposed Apoa2 as a target for H(2) treatment. MDPI 2023-07-11 /pmc/articles/PMC10379236/ /pubmed/37511084 http://dx.doi.org/10.3390/ijms241411325 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Yuanlin
Fan, Yan
Jiang, Yi
Wang, Enquan
Song, Yu
Chen, Hongguang
Xu, Feier
Xie, Keliang
Yu, Yonghao
APOA2: New Target for Molecular Hydrogen Therapy in Sepsis-Related Lung Injury Based on Proteomic and Genomic Analysis
title APOA2: New Target for Molecular Hydrogen Therapy in Sepsis-Related Lung Injury Based on Proteomic and Genomic Analysis
title_full APOA2: New Target for Molecular Hydrogen Therapy in Sepsis-Related Lung Injury Based on Proteomic and Genomic Analysis
title_fullStr APOA2: New Target for Molecular Hydrogen Therapy in Sepsis-Related Lung Injury Based on Proteomic and Genomic Analysis
title_full_unstemmed APOA2: New Target for Molecular Hydrogen Therapy in Sepsis-Related Lung Injury Based on Proteomic and Genomic Analysis
title_short APOA2: New Target for Molecular Hydrogen Therapy in Sepsis-Related Lung Injury Based on Proteomic and Genomic Analysis
title_sort apoa2: new target for molecular hydrogen therapy in sepsis-related lung injury based on proteomic and genomic analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10379236/
https://www.ncbi.nlm.nih.gov/pubmed/37511084
http://dx.doi.org/10.3390/ijms241411325
work_keys_str_mv AT wangyuanlin apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis
AT fanyan apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis
AT jiangyi apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis
AT wangenquan apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis
AT songyu apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis
AT chenhongguang apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis
AT xufeier apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis
AT xiekeliang apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis
AT yuyonghao apoa2newtargetformolecularhydrogentherapyinsepsisrelatedlunginjurybasedonproteomicandgenomicanalysis