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Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation

Stability analysis remains a fundamental step in developing a successful imaging biomarker to personalize oncological strategies. This study proposes an in silico contour generation method for simulating segmentation variations to identify stable radiomic features. Ground-truth annotation provided f...

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Autores principales: Thulasi Seetha, Sithin, Garanzini, Enrico, Tenconi, Chiara, Marenghi, Cristina, Avuzzi, Barbara, Catanzaro, Mario, Stagni, Silvia, Villa, Sergio, Chiorda, Barbara Noris, Badenchini, Fabio, Bertocchi, Elena, Sanduleanu, Sebastian, Pignoli, Emanuele, Procopio, Giuseppe, Valdagni, Riccardo, Rancati, Tiziana, Nicolai, Nicola, Messina, Antonella
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10381192/
https://www.ncbi.nlm.nih.gov/pubmed/37511785
http://dx.doi.org/10.3390/jpm13071172
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author Thulasi Seetha, Sithin
Garanzini, Enrico
Tenconi, Chiara
Marenghi, Cristina
Avuzzi, Barbara
Catanzaro, Mario
Stagni, Silvia
Villa, Sergio
Chiorda, Barbara Noris
Badenchini, Fabio
Bertocchi, Elena
Sanduleanu, Sebastian
Pignoli, Emanuele
Procopio, Giuseppe
Valdagni, Riccardo
Rancati, Tiziana
Nicolai, Nicola
Messina, Antonella
author_facet Thulasi Seetha, Sithin
Garanzini, Enrico
Tenconi, Chiara
Marenghi, Cristina
Avuzzi, Barbara
Catanzaro, Mario
Stagni, Silvia
Villa, Sergio
Chiorda, Barbara Noris
Badenchini, Fabio
Bertocchi, Elena
Sanduleanu, Sebastian
Pignoli, Emanuele
Procopio, Giuseppe
Valdagni, Riccardo
Rancati, Tiziana
Nicolai, Nicola
Messina, Antonella
author_sort Thulasi Seetha, Sithin
collection PubMed
description Stability analysis remains a fundamental step in developing a successful imaging biomarker to personalize oncological strategies. This study proposes an in silico contour generation method for simulating segmentation variations to identify stable radiomic features. Ground-truth annotation provided for the whole prostate gland on the multi-parametric MRI sequences (T2w, ADC, and SUB-DCE) were perturbed to mimic segmentation differences observed among human annotators. In total, we generated 15 synthetic contours for a given image-segmentation pair. One thousand two hundred twenty-four unfiltered/filtered radiomic features were extracted applying Pyradiomics, followed by stability assessment using ICC(1,1). Stable features identified in the internal population were then compared with an external population to discover and report robust features. Finally, we also investigated the impact of a wide range of filtering strategies on the stability of features. The percentage of unfiltered (filtered) features that remained robust subjected to segmentation variations were T2w—36% (81%), ADC—36% (94%), and SUB—43% (93%). Our findings suggest that segmentation variations can significantly impact radiomic feature stability but can be mitigated by including pre-filtering strategies as part of the feature extraction pipeline.
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spelling pubmed-103811922023-07-29 Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation Thulasi Seetha, Sithin Garanzini, Enrico Tenconi, Chiara Marenghi, Cristina Avuzzi, Barbara Catanzaro, Mario Stagni, Silvia Villa, Sergio Chiorda, Barbara Noris Badenchini, Fabio Bertocchi, Elena Sanduleanu, Sebastian Pignoli, Emanuele Procopio, Giuseppe Valdagni, Riccardo Rancati, Tiziana Nicolai, Nicola Messina, Antonella J Pers Med Article Stability analysis remains a fundamental step in developing a successful imaging biomarker to personalize oncological strategies. This study proposes an in silico contour generation method for simulating segmentation variations to identify stable radiomic features. Ground-truth annotation provided for the whole prostate gland on the multi-parametric MRI sequences (T2w, ADC, and SUB-DCE) were perturbed to mimic segmentation differences observed among human annotators. In total, we generated 15 synthetic contours for a given image-segmentation pair. One thousand two hundred twenty-four unfiltered/filtered radiomic features were extracted applying Pyradiomics, followed by stability assessment using ICC(1,1). Stable features identified in the internal population were then compared with an external population to discover and report robust features. Finally, we also investigated the impact of a wide range of filtering strategies on the stability of features. The percentage of unfiltered (filtered) features that remained robust subjected to segmentation variations were T2w—36% (81%), ADC—36% (94%), and SUB—43% (93%). Our findings suggest that segmentation variations can significantly impact radiomic feature stability but can be mitigated by including pre-filtering strategies as part of the feature extraction pipeline. MDPI 2023-07-22 /pmc/articles/PMC10381192/ /pubmed/37511785 http://dx.doi.org/10.3390/jpm13071172 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Thulasi Seetha, Sithin
Garanzini, Enrico
Tenconi, Chiara
Marenghi, Cristina
Avuzzi, Barbara
Catanzaro, Mario
Stagni, Silvia
Villa, Sergio
Chiorda, Barbara Noris
Badenchini, Fabio
Bertocchi, Elena
Sanduleanu, Sebastian
Pignoli, Emanuele
Procopio, Giuseppe
Valdagni, Riccardo
Rancati, Tiziana
Nicolai, Nicola
Messina, Antonella
Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation
title Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation
title_full Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation
title_fullStr Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation
title_full_unstemmed Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation
title_short Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation
title_sort stability of multi-parametric prostate mri radiomic features to variations in segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10381192/
https://www.ncbi.nlm.nih.gov/pubmed/37511785
http://dx.doi.org/10.3390/jpm13071172
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