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Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation
Stability analysis remains a fundamental step in developing a successful imaging biomarker to personalize oncological strategies. This study proposes an in silico contour generation method for simulating segmentation variations to identify stable radiomic features. Ground-truth annotation provided f...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10381192/ https://www.ncbi.nlm.nih.gov/pubmed/37511785 http://dx.doi.org/10.3390/jpm13071172 |
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author | Thulasi Seetha, Sithin Garanzini, Enrico Tenconi, Chiara Marenghi, Cristina Avuzzi, Barbara Catanzaro, Mario Stagni, Silvia Villa, Sergio Chiorda, Barbara Noris Badenchini, Fabio Bertocchi, Elena Sanduleanu, Sebastian Pignoli, Emanuele Procopio, Giuseppe Valdagni, Riccardo Rancati, Tiziana Nicolai, Nicola Messina, Antonella |
author_facet | Thulasi Seetha, Sithin Garanzini, Enrico Tenconi, Chiara Marenghi, Cristina Avuzzi, Barbara Catanzaro, Mario Stagni, Silvia Villa, Sergio Chiorda, Barbara Noris Badenchini, Fabio Bertocchi, Elena Sanduleanu, Sebastian Pignoli, Emanuele Procopio, Giuseppe Valdagni, Riccardo Rancati, Tiziana Nicolai, Nicola Messina, Antonella |
author_sort | Thulasi Seetha, Sithin |
collection | PubMed |
description | Stability analysis remains a fundamental step in developing a successful imaging biomarker to personalize oncological strategies. This study proposes an in silico contour generation method for simulating segmentation variations to identify stable radiomic features. Ground-truth annotation provided for the whole prostate gland on the multi-parametric MRI sequences (T2w, ADC, and SUB-DCE) were perturbed to mimic segmentation differences observed among human annotators. In total, we generated 15 synthetic contours for a given image-segmentation pair. One thousand two hundred twenty-four unfiltered/filtered radiomic features were extracted applying Pyradiomics, followed by stability assessment using ICC(1,1). Stable features identified in the internal population were then compared with an external population to discover and report robust features. Finally, we also investigated the impact of a wide range of filtering strategies on the stability of features. The percentage of unfiltered (filtered) features that remained robust subjected to segmentation variations were T2w—36% (81%), ADC—36% (94%), and SUB—43% (93%). Our findings suggest that segmentation variations can significantly impact radiomic feature stability but can be mitigated by including pre-filtering strategies as part of the feature extraction pipeline. |
format | Online Article Text |
id | pubmed-10381192 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-103811922023-07-29 Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation Thulasi Seetha, Sithin Garanzini, Enrico Tenconi, Chiara Marenghi, Cristina Avuzzi, Barbara Catanzaro, Mario Stagni, Silvia Villa, Sergio Chiorda, Barbara Noris Badenchini, Fabio Bertocchi, Elena Sanduleanu, Sebastian Pignoli, Emanuele Procopio, Giuseppe Valdagni, Riccardo Rancati, Tiziana Nicolai, Nicola Messina, Antonella J Pers Med Article Stability analysis remains a fundamental step in developing a successful imaging biomarker to personalize oncological strategies. This study proposes an in silico contour generation method for simulating segmentation variations to identify stable radiomic features. Ground-truth annotation provided for the whole prostate gland on the multi-parametric MRI sequences (T2w, ADC, and SUB-DCE) were perturbed to mimic segmentation differences observed among human annotators. In total, we generated 15 synthetic contours for a given image-segmentation pair. One thousand two hundred twenty-four unfiltered/filtered radiomic features were extracted applying Pyradiomics, followed by stability assessment using ICC(1,1). Stable features identified in the internal population were then compared with an external population to discover and report robust features. Finally, we also investigated the impact of a wide range of filtering strategies on the stability of features. The percentage of unfiltered (filtered) features that remained robust subjected to segmentation variations were T2w—36% (81%), ADC—36% (94%), and SUB—43% (93%). Our findings suggest that segmentation variations can significantly impact radiomic feature stability but can be mitigated by including pre-filtering strategies as part of the feature extraction pipeline. MDPI 2023-07-22 /pmc/articles/PMC10381192/ /pubmed/37511785 http://dx.doi.org/10.3390/jpm13071172 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Thulasi Seetha, Sithin Garanzini, Enrico Tenconi, Chiara Marenghi, Cristina Avuzzi, Barbara Catanzaro, Mario Stagni, Silvia Villa, Sergio Chiorda, Barbara Noris Badenchini, Fabio Bertocchi, Elena Sanduleanu, Sebastian Pignoli, Emanuele Procopio, Giuseppe Valdagni, Riccardo Rancati, Tiziana Nicolai, Nicola Messina, Antonella Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation |
title | Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation |
title_full | Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation |
title_fullStr | Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation |
title_full_unstemmed | Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation |
title_short | Stability of Multi-Parametric Prostate MRI Radiomic Features to Variations in Segmentation |
title_sort | stability of multi-parametric prostate mri radiomic features to variations in segmentation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10381192/ https://www.ncbi.nlm.nih.gov/pubmed/37511785 http://dx.doi.org/10.3390/jpm13071172 |
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