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Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications

Nowadays, brain tumors have become a leading cause of mortality worldwide. The brain cells in the tumor grow abnormally and badly affect the surrounding brain cells. These cells could be either cancerous or non-cancerous types, and their symptoms can vary depending on their location, size, and type....

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Autores principales: Asiri, Abdullah A., Shaf, Ahmad, Ali, Tariq, Aamir, Muhammad, Irfan, Muhammad, Alqahtani, Saeed, Mehdar, Khlood M., Halawani, Hanan Talal, Alghamdi, Ali H., Alshamrani, Abdullah Fahad A., Alqhtani, Samar M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10381218/
https://www.ncbi.nlm.nih.gov/pubmed/37511824
http://dx.doi.org/10.3390/life13071449
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author Asiri, Abdullah A.
Shaf, Ahmad
Ali, Tariq
Aamir, Muhammad
Irfan, Muhammad
Alqahtani, Saeed
Mehdar, Khlood M.
Halawani, Hanan Talal
Alghamdi, Ali H.
Alshamrani, Abdullah Fahad A.
Alqhtani, Samar M.
author_facet Asiri, Abdullah A.
Shaf, Ahmad
Ali, Tariq
Aamir, Muhammad
Irfan, Muhammad
Alqahtani, Saeed
Mehdar, Khlood M.
Halawani, Hanan Talal
Alghamdi, Ali H.
Alshamrani, Abdullah Fahad A.
Alqhtani, Samar M.
author_sort Asiri, Abdullah A.
collection PubMed
description Nowadays, brain tumors have become a leading cause of mortality worldwide. The brain cells in the tumor grow abnormally and badly affect the surrounding brain cells. These cells could be either cancerous or non-cancerous types, and their symptoms can vary depending on their location, size, and type. Due to its complex and varying structure, detecting and classifying the brain tumor accurately at the initial stages to avoid maximum death loss is challenging. This research proposes an improved fine-tuned model based on CNN with ResNet50 and U-Net to solve this problem. This model works on the publicly available dataset known as TCGA-LGG and TCIA. The dataset consists of 120 patients. The proposed CNN and fine-tuned ResNet50 model are used to detect and classify the tumor or no-tumor images. Furthermore, the U-Net model is integrated for the segmentation of the tumor regions correctly. The model performance evaluation metrics are accuracy, intersection over union, dice similarity coefficient, and similarity index. The results from fine-tuned ResNet50 model are IoU: 0.91, DSC: 0.95, SI: 0.95. In contrast, U-Net with ResNet50 outperforms all other models and correctly classified and segmented the tumor region.
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spelling pubmed-103812182023-07-29 Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications Asiri, Abdullah A. Shaf, Ahmad Ali, Tariq Aamir, Muhammad Irfan, Muhammad Alqahtani, Saeed Mehdar, Khlood M. Halawani, Hanan Talal Alghamdi, Ali H. Alshamrani, Abdullah Fahad A. Alqhtani, Samar M. Life (Basel) Article Nowadays, brain tumors have become a leading cause of mortality worldwide. The brain cells in the tumor grow abnormally and badly affect the surrounding brain cells. These cells could be either cancerous or non-cancerous types, and their symptoms can vary depending on their location, size, and type. Due to its complex and varying structure, detecting and classifying the brain tumor accurately at the initial stages to avoid maximum death loss is challenging. This research proposes an improved fine-tuned model based on CNN with ResNet50 and U-Net to solve this problem. This model works on the publicly available dataset known as TCGA-LGG and TCIA. The dataset consists of 120 patients. The proposed CNN and fine-tuned ResNet50 model are used to detect and classify the tumor or no-tumor images. Furthermore, the U-Net model is integrated for the segmentation of the tumor regions correctly. The model performance evaluation metrics are accuracy, intersection over union, dice similarity coefficient, and similarity index. The results from fine-tuned ResNet50 model are IoU: 0.91, DSC: 0.95, SI: 0.95. In contrast, U-Net with ResNet50 outperforms all other models and correctly classified and segmented the tumor region. MDPI 2023-06-26 /pmc/articles/PMC10381218/ /pubmed/37511824 http://dx.doi.org/10.3390/life13071449 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Asiri, Abdullah A.
Shaf, Ahmad
Ali, Tariq
Aamir, Muhammad
Irfan, Muhammad
Alqahtani, Saeed
Mehdar, Khlood M.
Halawani, Hanan Talal
Alghamdi, Ali H.
Alshamrani, Abdullah Fahad A.
Alqhtani, Samar M.
Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_full Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_fullStr Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_full_unstemmed Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_short Brain Tumor Detection and Classification Using Fine-Tuned CNN with ResNet50 and U-Net Model: A Study on TCGA-LGG and TCIA Dataset for MRI Applications
title_sort brain tumor detection and classification using fine-tuned cnn with resnet50 and u-net model: a study on tcga-lgg and tcia dataset for mri applications
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10381218/
https://www.ncbi.nlm.nih.gov/pubmed/37511824
http://dx.doi.org/10.3390/life13071449
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