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Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria

Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and inte...

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Autores principales: Patra, Ajit Kumar, Ho, Phuong-Thao, Jun, Siyeong, Lee, Seung Jae, Kim, Yuseob, Won, Yong-Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10382545/
https://www.ncbi.nlm.nih.gov/pubmed/37507420
http://dx.doi.org/10.1038/s41597-023-02403-9
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author Patra, Ajit Kumar
Ho, Phuong-Thao
Jun, Siyeong
Lee, Seung Jae
Kim, Yuseob
Won, Yong-Jin
author_facet Patra, Ajit Kumar
Ho, Phuong-Thao
Jun, Siyeong
Lee, Seung Jae
Kim, Yuseob
Won, Yong-Jin
author_sort Patra, Ajit Kumar
collection PubMed
description Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and intertidal zones. It can endure and adapt the harsh intertidal conditions such as frequent temperature alteration, salinity, and air exposure. Therefore, we sequenced and assembled this Korean batillariid genome to get insight into its intertidal adaptive features. Approximately 53 Gb of DNA sequences were generated, and 863 scaffolds were assembled into a draft genome of 0.715 Gb with 97.1% BUSCO completeness value. A total of 40,596 genes were predicted. We estimated that B. attramentaria and Conus consors diverged about 230 million years ago (MYA) based on the phylogenetic analysis of closely related gastropod species. This genome study sets the footstep for genomics studies among native and introduced Batillaria populations and the Batillaridae family members.
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spelling pubmed-103825452023-07-30 Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria Patra, Ajit Kumar Ho, Phuong-Thao Jun, Siyeong Lee, Seung Jae Kim, Yuseob Won, Yong-Jin Sci Data Data Descriptor Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and intertidal zones. It can endure and adapt the harsh intertidal conditions such as frequent temperature alteration, salinity, and air exposure. Therefore, we sequenced and assembled this Korean batillariid genome to get insight into its intertidal adaptive features. Approximately 53 Gb of DNA sequences were generated, and 863 scaffolds were assembled into a draft genome of 0.715 Gb with 97.1% BUSCO completeness value. A total of 40,596 genes were predicted. We estimated that B. attramentaria and Conus consors diverged about 230 million years ago (MYA) based on the phylogenetic analysis of closely related gastropod species. This genome study sets the footstep for genomics studies among native and introduced Batillaria populations and the Batillaridae family members. Nature Publishing Group UK 2023-07-28 /pmc/articles/PMC10382545/ /pubmed/37507420 http://dx.doi.org/10.1038/s41597-023-02403-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Patra, Ajit Kumar
Ho, Phuong-Thao
Jun, Siyeong
Lee, Seung Jae
Kim, Yuseob
Won, Yong-Jin
Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria
title Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria
title_full Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria
title_fullStr Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria
title_full_unstemmed Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria
title_short Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria
title_sort genome assembly of the korean intertidal mud-creeper batillaria attramentaria
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10382545/
https://www.ncbi.nlm.nih.gov/pubmed/37507420
http://dx.doi.org/10.1038/s41597-023-02403-9
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