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Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria
Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and inte...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10382545/ https://www.ncbi.nlm.nih.gov/pubmed/37507420 http://dx.doi.org/10.1038/s41597-023-02403-9 |
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author | Patra, Ajit Kumar Ho, Phuong-Thao Jun, Siyeong Lee, Seung Jae Kim, Yuseob Won, Yong-Jin |
author_facet | Patra, Ajit Kumar Ho, Phuong-Thao Jun, Siyeong Lee, Seung Jae Kim, Yuseob Won, Yong-Jin |
author_sort | Patra, Ajit Kumar |
collection | PubMed |
description | Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and intertidal zones. It can endure and adapt the harsh intertidal conditions such as frequent temperature alteration, salinity, and air exposure. Therefore, we sequenced and assembled this Korean batillariid genome to get insight into its intertidal adaptive features. Approximately 53 Gb of DNA sequences were generated, and 863 scaffolds were assembled into a draft genome of 0.715 Gb with 97.1% BUSCO completeness value. A total of 40,596 genes were predicted. We estimated that B. attramentaria and Conus consors diverged about 230 million years ago (MYA) based on the phylogenetic analysis of closely related gastropod species. This genome study sets the footstep for genomics studies among native and introduced Batillaria populations and the Batillaridae family members. |
format | Online Article Text |
id | pubmed-10382545 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103825452023-07-30 Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria Patra, Ajit Kumar Ho, Phuong-Thao Jun, Siyeong Lee, Seung Jae Kim, Yuseob Won, Yong-Jin Sci Data Data Descriptor Batillaridae is a common gastropod family that occurs abundantly in the shallow coastal zone of the intertidal mudflats of the northwest Pacific Ocean, Australasia, and North America. In this family, Batillaria attramentaria is known for its biological invasion and colonization in estuarine and intertidal zones. It can endure and adapt the harsh intertidal conditions such as frequent temperature alteration, salinity, and air exposure. Therefore, we sequenced and assembled this Korean batillariid genome to get insight into its intertidal adaptive features. Approximately 53 Gb of DNA sequences were generated, and 863 scaffolds were assembled into a draft genome of 0.715 Gb with 97.1% BUSCO completeness value. A total of 40,596 genes were predicted. We estimated that B. attramentaria and Conus consors diverged about 230 million years ago (MYA) based on the phylogenetic analysis of closely related gastropod species. This genome study sets the footstep for genomics studies among native and introduced Batillaria populations and the Batillaridae family members. Nature Publishing Group UK 2023-07-28 /pmc/articles/PMC10382545/ /pubmed/37507420 http://dx.doi.org/10.1038/s41597-023-02403-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Patra, Ajit Kumar Ho, Phuong-Thao Jun, Siyeong Lee, Seung Jae Kim, Yuseob Won, Yong-Jin Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
title | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
title_full | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
title_fullStr | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
title_full_unstemmed | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
title_short | Genome assembly of the Korean intertidal mud-creeper Batillaria attramentaria |
title_sort | genome assembly of the korean intertidal mud-creeper batillaria attramentaria |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10382545/ https://www.ncbi.nlm.nih.gov/pubmed/37507420 http://dx.doi.org/10.1038/s41597-023-02403-9 |
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