Cargando…

Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato

The PLATZ (plant AT protein and zinc-binding protein) transcription factor family is involved in the regulation of plant growth and development and plant stress response. In this study, 24 SlPLATZs were identified from the cultivated tomato genome and classified into four groups based on the similar...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Lifang, Yang, Tao, Wang, Zepeng, Zhang, Fulin, Li, Ning, Jiang, Weijie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10384190/
https://www.ncbi.nlm.nih.gov/pubmed/37514247
http://dx.doi.org/10.3390/plants12142632
_version_ 1785081096588754944
author Zhang, Lifang
Yang, Tao
Wang, Zepeng
Zhang, Fulin
Li, Ning
Jiang, Weijie
author_facet Zhang, Lifang
Yang, Tao
Wang, Zepeng
Zhang, Fulin
Li, Ning
Jiang, Weijie
author_sort Zhang, Lifang
collection PubMed
description The PLATZ (plant AT protein and zinc-binding protein) transcription factor family is involved in the regulation of plant growth and development and plant stress response. In this study, 24 SlPLATZs were identified from the cultivated tomato genome and classified into four groups based on the similarity of conserved patterns among members of the same subfamily. Fragment duplication was an important way to expand the SlPLATZ gene family in tomatoes, and the sequential order of tomato PLATZ genes in the evolution of monocotyledonous and dicotyledonous plants and the roles they played were hypothesized. Expression profiles based on quantitative real-time reverse transcription PCR showed that SlPLATZ was involved in the growth of different tissues in tomatoes. SlPLATZ21 acts mainly in the leaves. SlPLATZ9, SlPLATZ21, and SlPLATZ23 were primarily involved in the red ripening, expanding, and mature green periods of fruit, respectively. In addition, SlPLATZ1 was found to play an important role in salt stress. This study will lay the foundation for the analysis of the biological functions of SlPLATZ genes and will also provide a theoretical basis for the selection and breeding of new tomato varieties and germplasm innovation.
format Online
Article
Text
id pubmed-10384190
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-103841902023-07-30 Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato Zhang, Lifang Yang, Tao Wang, Zepeng Zhang, Fulin Li, Ning Jiang, Weijie Plants (Basel) Article The PLATZ (plant AT protein and zinc-binding protein) transcription factor family is involved in the regulation of plant growth and development and plant stress response. In this study, 24 SlPLATZs were identified from the cultivated tomato genome and classified into four groups based on the similarity of conserved patterns among members of the same subfamily. Fragment duplication was an important way to expand the SlPLATZ gene family in tomatoes, and the sequential order of tomato PLATZ genes in the evolution of monocotyledonous and dicotyledonous plants and the roles they played were hypothesized. Expression profiles based on quantitative real-time reverse transcription PCR showed that SlPLATZ was involved in the growth of different tissues in tomatoes. SlPLATZ21 acts mainly in the leaves. SlPLATZ9, SlPLATZ21, and SlPLATZ23 were primarily involved in the red ripening, expanding, and mature green periods of fruit, respectively. In addition, SlPLATZ1 was found to play an important role in salt stress. This study will lay the foundation for the analysis of the biological functions of SlPLATZ genes and will also provide a theoretical basis for the selection and breeding of new tomato varieties and germplasm innovation. MDPI 2023-07-13 /pmc/articles/PMC10384190/ /pubmed/37514247 http://dx.doi.org/10.3390/plants12142632 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Lifang
Yang, Tao
Wang, Zepeng
Zhang, Fulin
Li, Ning
Jiang, Weijie
Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato
title Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato
title_full Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato
title_fullStr Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato
title_full_unstemmed Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato
title_short Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato
title_sort genome-wide identification and expression analysis of the platz transcription factor in tomato
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10384190/
https://www.ncbi.nlm.nih.gov/pubmed/37514247
http://dx.doi.org/10.3390/plants12142632
work_keys_str_mv AT zhanglifang genomewideidentificationandexpressionanalysisoftheplatztranscriptionfactorintomato
AT yangtao genomewideidentificationandexpressionanalysisoftheplatztranscriptionfactorintomato
AT wangzepeng genomewideidentificationandexpressionanalysisoftheplatztranscriptionfactorintomato
AT zhangfulin genomewideidentificationandexpressionanalysisoftheplatztranscriptionfactorintomato
AT lining genomewideidentificationandexpressionanalysisoftheplatztranscriptionfactorintomato
AT jiangweijie genomewideidentificationandexpressionanalysisoftheplatztranscriptionfactorintomato