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Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato
The PLATZ (plant AT protein and zinc-binding protein) transcription factor family is involved in the regulation of plant growth and development and plant stress response. In this study, 24 SlPLATZs were identified from the cultivated tomato genome and classified into four groups based on the similar...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10384190/ https://www.ncbi.nlm.nih.gov/pubmed/37514247 http://dx.doi.org/10.3390/plants12142632 |
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author | Zhang, Lifang Yang, Tao Wang, Zepeng Zhang, Fulin Li, Ning Jiang, Weijie |
author_facet | Zhang, Lifang Yang, Tao Wang, Zepeng Zhang, Fulin Li, Ning Jiang, Weijie |
author_sort | Zhang, Lifang |
collection | PubMed |
description | The PLATZ (plant AT protein and zinc-binding protein) transcription factor family is involved in the regulation of plant growth and development and plant stress response. In this study, 24 SlPLATZs were identified from the cultivated tomato genome and classified into four groups based on the similarity of conserved patterns among members of the same subfamily. Fragment duplication was an important way to expand the SlPLATZ gene family in tomatoes, and the sequential order of tomato PLATZ genes in the evolution of monocotyledonous and dicotyledonous plants and the roles they played were hypothesized. Expression profiles based on quantitative real-time reverse transcription PCR showed that SlPLATZ was involved in the growth of different tissues in tomatoes. SlPLATZ21 acts mainly in the leaves. SlPLATZ9, SlPLATZ21, and SlPLATZ23 were primarily involved in the red ripening, expanding, and mature green periods of fruit, respectively. In addition, SlPLATZ1 was found to play an important role in salt stress. This study will lay the foundation for the analysis of the biological functions of SlPLATZ genes and will also provide a theoretical basis for the selection and breeding of new tomato varieties and germplasm innovation. |
format | Online Article Text |
id | pubmed-10384190 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-103841902023-07-30 Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato Zhang, Lifang Yang, Tao Wang, Zepeng Zhang, Fulin Li, Ning Jiang, Weijie Plants (Basel) Article The PLATZ (plant AT protein and zinc-binding protein) transcription factor family is involved in the regulation of plant growth and development and plant stress response. In this study, 24 SlPLATZs were identified from the cultivated tomato genome and classified into four groups based on the similarity of conserved patterns among members of the same subfamily. Fragment duplication was an important way to expand the SlPLATZ gene family in tomatoes, and the sequential order of tomato PLATZ genes in the evolution of monocotyledonous and dicotyledonous plants and the roles they played were hypothesized. Expression profiles based on quantitative real-time reverse transcription PCR showed that SlPLATZ was involved in the growth of different tissues in tomatoes. SlPLATZ21 acts mainly in the leaves. SlPLATZ9, SlPLATZ21, and SlPLATZ23 were primarily involved in the red ripening, expanding, and mature green periods of fruit, respectively. In addition, SlPLATZ1 was found to play an important role in salt stress. This study will lay the foundation for the analysis of the biological functions of SlPLATZ genes and will also provide a theoretical basis for the selection and breeding of new tomato varieties and germplasm innovation. MDPI 2023-07-13 /pmc/articles/PMC10384190/ /pubmed/37514247 http://dx.doi.org/10.3390/plants12142632 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhang, Lifang Yang, Tao Wang, Zepeng Zhang, Fulin Li, Ning Jiang, Weijie Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato |
title | Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato |
title_full | Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato |
title_fullStr | Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato |
title_full_unstemmed | Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato |
title_short | Genome-Wide Identification and Expression Analysis of the PLATZ Transcription Factor in Tomato |
title_sort | genome-wide identification and expression analysis of the platz transcription factor in tomato |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10384190/ https://www.ncbi.nlm.nih.gov/pubmed/37514247 http://dx.doi.org/10.3390/plants12142632 |
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