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Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia
Edible Macadamia is one of the most important commercial nut trees cultivated in many countries, but its large tree size and long juvenile period pose barriers to commercial cultivation. The short domestication period and well-annotated genome of Macadamia integrifolia create great opportunities to...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10385423/ https://www.ncbi.nlm.nih.gov/pubmed/37514306 http://dx.doi.org/10.3390/plants12142692 |
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author | Yang, Jing Ning, Conghui Liu, Ziyan Zheng, Cheng Mao, Yawen Wu, Qing Wang, Dongfa Liu, Mingli Zhou, Shaoli Yang, Liling He, Liangliang Liu, Yu He, Chengzhong Chen, Jianghua Liu, Jin |
author_facet | Yang, Jing Ning, Conghui Liu, Ziyan Zheng, Cheng Mao, Yawen Wu, Qing Wang, Dongfa Liu, Mingli Zhou, Shaoli Yang, Liling He, Liangliang Liu, Yu He, Chengzhong Chen, Jianghua Liu, Jin |
author_sort | Yang, Jing |
collection | PubMed |
description | Edible Macadamia is one of the most important commercial nut trees cultivated in many countries, but its large tree size and long juvenile period pose barriers to commercial cultivation. The short domestication period and well-annotated genome of Macadamia integrifolia create great opportunities to breed commercial varieties with superior traits. Recent studies have shown that members of the phosphatidylethanolamine binding protein (PEBP) family play pivotal roles in regulating plant architecture and flowering time in various plants. In this study, thirteen members of MiPEBP were identified in the genome of M. integrifolia, and they are highly similarity in both motif and gene structure. A phylogenetic analysis divided the MiPEBP genes into three subfamilies: MFT-like, FT-like and TFL1-like. We subsequently identified two TERMINAL FLOWER 1 homologues from the TFL1-like subfamily, MiTFL1 and MiTFL1-like, both of which were highly expressed in stems and vegetative shoots, while MiTFL1-like was highly expressed in young leaves and early flowers. A subcellular location analysis revealed that both MiTFL1 and MiTFL1-like are localized in the cytoplasm and nucleus. The ectopic expression of MiTFL1 can rescue the early-flowering and terminal-flower phenotypes in the tfl1–14 mutant of Arabidopsis thaliana, and it indicates the conserved functions in controlling the inflorescence architecture and flowering time. This study will provide insight into the isolation of PEBP family members and the key targets for breeding M. integrifolia with improved traits in plant architecture and flowering time. |
format | Online Article Text |
id | pubmed-10385423 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-103854232023-07-30 Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia Yang, Jing Ning, Conghui Liu, Ziyan Zheng, Cheng Mao, Yawen Wu, Qing Wang, Dongfa Liu, Mingli Zhou, Shaoli Yang, Liling He, Liangliang Liu, Yu He, Chengzhong Chen, Jianghua Liu, Jin Plants (Basel) Article Edible Macadamia is one of the most important commercial nut trees cultivated in many countries, but its large tree size and long juvenile period pose barriers to commercial cultivation. The short domestication period and well-annotated genome of Macadamia integrifolia create great opportunities to breed commercial varieties with superior traits. Recent studies have shown that members of the phosphatidylethanolamine binding protein (PEBP) family play pivotal roles in regulating plant architecture and flowering time in various plants. In this study, thirteen members of MiPEBP were identified in the genome of M. integrifolia, and they are highly similarity in both motif and gene structure. A phylogenetic analysis divided the MiPEBP genes into three subfamilies: MFT-like, FT-like and TFL1-like. We subsequently identified two TERMINAL FLOWER 1 homologues from the TFL1-like subfamily, MiTFL1 and MiTFL1-like, both of which were highly expressed in stems and vegetative shoots, while MiTFL1-like was highly expressed in young leaves and early flowers. A subcellular location analysis revealed that both MiTFL1 and MiTFL1-like are localized in the cytoplasm and nucleus. The ectopic expression of MiTFL1 can rescue the early-flowering and terminal-flower phenotypes in the tfl1–14 mutant of Arabidopsis thaliana, and it indicates the conserved functions in controlling the inflorescence architecture and flowering time. This study will provide insight into the isolation of PEBP family members and the key targets for breeding M. integrifolia with improved traits in plant architecture and flowering time. MDPI 2023-07-19 /pmc/articles/PMC10385423/ /pubmed/37514306 http://dx.doi.org/10.3390/plants12142692 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yang, Jing Ning, Conghui Liu, Ziyan Zheng, Cheng Mao, Yawen Wu, Qing Wang, Dongfa Liu, Mingli Zhou, Shaoli Yang, Liling He, Liangliang Liu, Yu He, Chengzhong Chen, Jianghua Liu, Jin Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia |
title | Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia |
title_full | Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia |
title_fullStr | Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia |
title_full_unstemmed | Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia |
title_short | Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia |
title_sort | genome-wide characterization of pebp gene family and functional analysis of terminal flower 1 homologs in macadamia integrifolia |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10385423/ https://www.ncbi.nlm.nih.gov/pubmed/37514306 http://dx.doi.org/10.3390/plants12142692 |
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