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Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia

Edible Macadamia is one of the most important commercial nut trees cultivated in many countries, but its large tree size and long juvenile period pose barriers to commercial cultivation. The short domestication period and well-annotated genome of Macadamia integrifolia create great opportunities to...

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Autores principales: Yang, Jing, Ning, Conghui, Liu, Ziyan, Zheng, Cheng, Mao, Yawen, Wu, Qing, Wang, Dongfa, Liu, Mingli, Zhou, Shaoli, Yang, Liling, He, Liangliang, Liu, Yu, He, Chengzhong, Chen, Jianghua, Liu, Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10385423/
https://www.ncbi.nlm.nih.gov/pubmed/37514306
http://dx.doi.org/10.3390/plants12142692
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author Yang, Jing
Ning, Conghui
Liu, Ziyan
Zheng, Cheng
Mao, Yawen
Wu, Qing
Wang, Dongfa
Liu, Mingli
Zhou, Shaoli
Yang, Liling
He, Liangliang
Liu, Yu
He, Chengzhong
Chen, Jianghua
Liu, Jin
author_facet Yang, Jing
Ning, Conghui
Liu, Ziyan
Zheng, Cheng
Mao, Yawen
Wu, Qing
Wang, Dongfa
Liu, Mingli
Zhou, Shaoli
Yang, Liling
He, Liangliang
Liu, Yu
He, Chengzhong
Chen, Jianghua
Liu, Jin
author_sort Yang, Jing
collection PubMed
description Edible Macadamia is one of the most important commercial nut trees cultivated in many countries, but its large tree size and long juvenile period pose barriers to commercial cultivation. The short domestication period and well-annotated genome of Macadamia integrifolia create great opportunities to breed commercial varieties with superior traits. Recent studies have shown that members of the phosphatidylethanolamine binding protein (PEBP) family play pivotal roles in regulating plant architecture and flowering time in various plants. In this study, thirteen members of MiPEBP were identified in the genome of M. integrifolia, and they are highly similarity in both motif and gene structure. A phylogenetic analysis divided the MiPEBP genes into three subfamilies: MFT-like, FT-like and TFL1-like. We subsequently identified two TERMINAL FLOWER 1 homologues from the TFL1-like subfamily, MiTFL1 and MiTFL1-like, both of which were highly expressed in stems and vegetative shoots, while MiTFL1-like was highly expressed in young leaves and early flowers. A subcellular location analysis revealed that both MiTFL1 and MiTFL1-like are localized in the cytoplasm and nucleus. The ectopic expression of MiTFL1 can rescue the early-flowering and terminal-flower phenotypes in the tfl1–14 mutant of Arabidopsis thaliana, and it indicates the conserved functions in controlling the inflorescence architecture and flowering time. This study will provide insight into the isolation of PEBP family members and the key targets for breeding M. integrifolia with improved traits in plant architecture and flowering time.
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spelling pubmed-103854232023-07-30 Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia Yang, Jing Ning, Conghui Liu, Ziyan Zheng, Cheng Mao, Yawen Wu, Qing Wang, Dongfa Liu, Mingli Zhou, Shaoli Yang, Liling He, Liangliang Liu, Yu He, Chengzhong Chen, Jianghua Liu, Jin Plants (Basel) Article Edible Macadamia is one of the most important commercial nut trees cultivated in many countries, but its large tree size and long juvenile period pose barriers to commercial cultivation. The short domestication period and well-annotated genome of Macadamia integrifolia create great opportunities to breed commercial varieties with superior traits. Recent studies have shown that members of the phosphatidylethanolamine binding protein (PEBP) family play pivotal roles in regulating plant architecture and flowering time in various plants. In this study, thirteen members of MiPEBP were identified in the genome of M. integrifolia, and they are highly similarity in both motif and gene structure. A phylogenetic analysis divided the MiPEBP genes into three subfamilies: MFT-like, FT-like and TFL1-like. We subsequently identified two TERMINAL FLOWER 1 homologues from the TFL1-like subfamily, MiTFL1 and MiTFL1-like, both of which were highly expressed in stems and vegetative shoots, while MiTFL1-like was highly expressed in young leaves and early flowers. A subcellular location analysis revealed that both MiTFL1 and MiTFL1-like are localized in the cytoplasm and nucleus. The ectopic expression of MiTFL1 can rescue the early-flowering and terminal-flower phenotypes in the tfl1–14 mutant of Arabidopsis thaliana, and it indicates the conserved functions in controlling the inflorescence architecture and flowering time. This study will provide insight into the isolation of PEBP family members and the key targets for breeding M. integrifolia with improved traits in plant architecture and flowering time. MDPI 2023-07-19 /pmc/articles/PMC10385423/ /pubmed/37514306 http://dx.doi.org/10.3390/plants12142692 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yang, Jing
Ning, Conghui
Liu, Ziyan
Zheng, Cheng
Mao, Yawen
Wu, Qing
Wang, Dongfa
Liu, Mingli
Zhou, Shaoli
Yang, Liling
He, Liangliang
Liu, Yu
He, Chengzhong
Chen, Jianghua
Liu, Jin
Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia
title Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia
title_full Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia
title_fullStr Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia
title_full_unstemmed Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia
title_short Genome-Wide Characterization of PEBP Gene Family and Functional Analysis of TERMINAL FLOWER 1 Homologs in Macadamia integrifolia
title_sort genome-wide characterization of pebp gene family and functional analysis of terminal flower 1 homologs in macadamia integrifolia
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10385423/
https://www.ncbi.nlm.nih.gov/pubmed/37514306
http://dx.doi.org/10.3390/plants12142692
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