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Development of Debiasing Technique for Lung Nodule Chest X-ray Datasets to Generalize Deep Learning Models

Screening programs for early lung cancer diagnosis are uncommon, primarily due to the challenge of reaching at-risk patients located in rural areas far from medical facilities. To overcome this obstacle, a comprehensive approach is needed that combines mobility, low cost, speed, accuracy, and privac...

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Autores principales: Horry, Michael J., Chakraborty, Subrata, Pradhan, Biswajeet, Paul, Manoranjan, Zhu, Jing, Loh, Hui Wen, Barua, Prabal Datta, Acharya, U. Rajendra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10385599/
https://www.ncbi.nlm.nih.gov/pubmed/37514877
http://dx.doi.org/10.3390/s23146585
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author Horry, Michael J.
Chakraborty, Subrata
Pradhan, Biswajeet
Paul, Manoranjan
Zhu, Jing
Loh, Hui Wen
Barua, Prabal Datta
Acharya, U. Rajendra
author_facet Horry, Michael J.
Chakraborty, Subrata
Pradhan, Biswajeet
Paul, Manoranjan
Zhu, Jing
Loh, Hui Wen
Barua, Prabal Datta
Acharya, U. Rajendra
author_sort Horry, Michael J.
collection PubMed
description Screening programs for early lung cancer diagnosis are uncommon, primarily due to the challenge of reaching at-risk patients located in rural areas far from medical facilities. To overcome this obstacle, a comprehensive approach is needed that combines mobility, low cost, speed, accuracy, and privacy. One potential solution lies in combining the chest X-ray imaging mode with federated deep learning, ensuring that no single data source can bias the model adversely. This study presents a pre-processing pipeline designed to debias chest X-ray images, thereby enhancing internal classification and external generalization. The pipeline employs a pruning mechanism to train a deep learning model for nodule detection, utilizing the most informative images from a publicly available lung nodule X-ray dataset. Histogram equalization is used to remove systematic differences in image brightness and contrast. Model training is then performed using combinations of lung field segmentation, close cropping, and rib/bone suppression. The resulting deep learning models, generated through this pre-processing pipeline, demonstrate successful generalization on an independent lung nodule dataset. By eliminating confounding variables in chest X-ray images and suppressing signal noise from the bone structures, the proposed deep learning lung nodule detection algorithm achieves an external generalization accuracy of 89%. This approach paves the way for the development of a low-cost and accessible deep learning-based clinical system for lung cancer screening.
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spelling pubmed-103855992023-07-30 Development of Debiasing Technique for Lung Nodule Chest X-ray Datasets to Generalize Deep Learning Models Horry, Michael J. Chakraborty, Subrata Pradhan, Biswajeet Paul, Manoranjan Zhu, Jing Loh, Hui Wen Barua, Prabal Datta Acharya, U. Rajendra Sensors (Basel) Article Screening programs for early lung cancer diagnosis are uncommon, primarily due to the challenge of reaching at-risk patients located in rural areas far from medical facilities. To overcome this obstacle, a comprehensive approach is needed that combines mobility, low cost, speed, accuracy, and privacy. One potential solution lies in combining the chest X-ray imaging mode with federated deep learning, ensuring that no single data source can bias the model adversely. This study presents a pre-processing pipeline designed to debias chest X-ray images, thereby enhancing internal classification and external generalization. The pipeline employs a pruning mechanism to train a deep learning model for nodule detection, utilizing the most informative images from a publicly available lung nodule X-ray dataset. Histogram equalization is used to remove systematic differences in image brightness and contrast. Model training is then performed using combinations of lung field segmentation, close cropping, and rib/bone suppression. The resulting deep learning models, generated through this pre-processing pipeline, demonstrate successful generalization on an independent lung nodule dataset. By eliminating confounding variables in chest X-ray images and suppressing signal noise from the bone structures, the proposed deep learning lung nodule detection algorithm achieves an external generalization accuracy of 89%. This approach paves the way for the development of a low-cost and accessible deep learning-based clinical system for lung cancer screening. MDPI 2023-07-21 /pmc/articles/PMC10385599/ /pubmed/37514877 http://dx.doi.org/10.3390/s23146585 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Horry, Michael J.
Chakraborty, Subrata
Pradhan, Biswajeet
Paul, Manoranjan
Zhu, Jing
Loh, Hui Wen
Barua, Prabal Datta
Acharya, U. Rajendra
Development of Debiasing Technique for Lung Nodule Chest X-ray Datasets to Generalize Deep Learning Models
title Development of Debiasing Technique for Lung Nodule Chest X-ray Datasets to Generalize Deep Learning Models
title_full Development of Debiasing Technique for Lung Nodule Chest X-ray Datasets to Generalize Deep Learning Models
title_fullStr Development of Debiasing Technique for Lung Nodule Chest X-ray Datasets to Generalize Deep Learning Models
title_full_unstemmed Development of Debiasing Technique for Lung Nodule Chest X-ray Datasets to Generalize Deep Learning Models
title_short Development of Debiasing Technique for Lung Nodule Chest X-ray Datasets to Generalize Deep Learning Models
title_sort development of debiasing technique for lung nodule chest x-ray datasets to generalize deep learning models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10385599/
https://www.ncbi.nlm.nih.gov/pubmed/37514877
http://dx.doi.org/10.3390/s23146585
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